View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15466_low_7 (Length: 217)
Name: NF15466_low_7
Description: NF15466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15466_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 52438129 - 52437928
Alignment:
| Q |
1 |
tgacaacactaaagtcaatcatatattgtctgctcaagatcggacgtcccatattttaagtttgaattttaaatttaaaaacaattaaaatcgtgcttga |
100 |
Q |
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| T |
52438129 |
tgacaacatttaagtcaatcatatattgtctgctcaagatcggacgtcccatattttaagtttgaattttaaatttaaaaacaattaaaatcgtgcttga |
52438030 |
T |
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| Q |
101 |
aatttgagcagccctattttaatcgaacaatcgaaagccaatcgattgtgtgcaatcaactgcactcaatacaaatcaatctccaatgaggttggtttag |
200 |
Q |
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| T |
52438029 |
aattttagcagccctattttaatcgaacaatccaaagccaatcgattgtgtgcaatcaactgcactcaatacaaatcaatctccaataaggttggtttag |
52437930 |
T |
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| Q |
201 |
at |
202 |
Q |
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| T |
52437929 |
at |
52437928 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 21579384 - 21579433
Alignment:
| Q |
43 |
gacgtcccatattttaagtttgaattttaaatttaaaaacaattaaaatc |
92 |
Q |
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|||| |||| |||||||| |||||||||| |||||||||||| ||||||| |
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| T |
21579384 |
gacgacccaaattttaagcttgaattttatatttaaaaacaaataaaatc |
21579433 |
T |
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