View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15467_high_1_N (Length: 498)
Name: NF15467_high_1_N
Description: NF15467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15467_high_1_N |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 42 - 286
Target Start/End: Original strand, 2660933 - 2661175
Alignment:
| Q |
42 |
aacctgtgaatttcatttcaactggaaattttatgccggataaggataatgttgatgaggatttgaaagagcaggatgagtggagaagcaaaggcctggt |
141 |
Q |
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| T |
2660933 |
aaccagtgaatttcatttcaactggaaattttatgccggataaggataatgttgatgaggatttgaaagagcaggatga-tggtgaag-ataggcctggt |
2661030 |
T |
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| Q |
142 |
ttagggttaggttttgggtcggctagtgtatcggggtctggtctaggatttaattctggtcgtggtgtgaatggttcagataggaatgatgatgaatctg |
241 |
Q |
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| T |
2661031 |
tttgggttaggttttgggtcggctagtgtatcggggtctggtctaggatttaattctggtcgtggtgtgaatggttcagataggaatgatgatgaatctg |
2661130 |
T |
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| Q |
242 |
atgagaatgataatcgggatgataaatttttgcctactgcgtttg |
286 |
Q |
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| T |
2661131 |
atgagaatgataatcgggatgataaatttttgcctactgcgtttg |
2661175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 361 - 498
Target Start/End: Original strand, 2661253 - 2661390
Alignment:
| Q |
361 |
ccggggatgggtttaggtcaggaggggtctgtggatgttgggaaattcgagagtcatacgaagggaattggaatgaagctgcttgagaagatgggttata |
460 |
Q |
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| T |
2661253 |
ccggggatgggtttaggtcaggaggggtctgtggatgttgggaaattcgagagtcatacaaagggaattggaatgaagctgcttgagaagatgggttata |
2661352 |
T |
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| Q |
461 |
aagggggtggtcttgggaagaatgagcagggtatttta |
498 |
Q |
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| T |
2661353 |
aagggggtggtcttgggaagaatgagcagggtatttta |
2661390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 369 - 494
Target Start/End: Original strand, 25951995 - 25952117
Alignment:
| Q |
369 |
gggtttaggtcaggaggggtctgtggatgttgggaaattcgagagtcatacgaagggaattggaatgaagctgcttgagaagatgggttataaagggggt |
468 |
Q |
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|||| ||||||||||||| || || ||||||||||||||| ||||| ||| | ||||| |||||||||||| | ||||| |||||||||||||| ||| |
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| T |
25951995 |
gggtctaggtcaggagggatcagttgatgttgggaaattcaagagttata---acggaatgggaatgaagctgatggagaaaatgggttataaaggaggt |
25952091 |
T |
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| Q |
469 |
ggtcttgggaagaatgagcagggtat |
494 |
Q |
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| T |
25952092 |
ggtcttgggaagaatgagcagggtat |
25952117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 374 - 494
Target Start/End: Original strand, 25945404 - 25945521
Alignment:
| Q |
374 |
taggtcaggaggggtctgtggatgttgggaaattcgagagtcatacgaagggaattggaatgaagctgcttgagaagatgggttataaagggggtggtct |
473 |
Q |
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||||||| |||| || ||||||||||||||||| |||| | ||| || ||||| |||||||||||| | ||||| |||||||||||||| |||||||| |
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| T |
25945404 |
taggtcacgaggaatcagtggatgttgggaaattggagaat--tac-aacggaatgggaatgaagctgatggagaaaatgggttataaaggaggtggtct |
25945500 |
T |
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| Q |
474 |
tgggaagaatgagcagggtat |
494 |
Q |
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| T |
25945501 |
tgggaagaatgagcagggtat |
25945521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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