View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15467_high_2 (Length: 489)
Name: NF15467_high_2
Description: NF15467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15467_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 45628640 - 45628159
Alignment:
| Q |
1 |
gggttatactgaattttggtaaaagtttattgttgggacttgaaggcagatcaatcaaactattacatagtgtgggaaatgactataactgaattcttaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45628640 |
gggttatactgaattttggtaaaagtttattgttgggacttggaggcagatgaatcaaactattacatagtgtgggaaatgactataactgaattcttaa |
45628541 |
T |
|
| Q |
101 |
cagtatgttaataaatccgtttagctttaacagagtacacccaaaacataatgtgcataaaagttatcaagcaacacataatgcttataactaaaagtgc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45628540 |
cagtatgttaataaatccgtttagctttaacagagtacacccaaaacatagtgtgcataaaagttatcaagcaacacataatgcttataactaaaagtgc |
45628441 |
T |
|
| Q |
201 |
ttttaacttaactacaaaacagaataagattttcaactataaactctattaactacaaatgtgaagtgtgaacaactattattactggagaatagagatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45628440 |
ttttaacttaactacaaaacagaataagattttcaactataaactctattaactacaaatgtgaagtgtgaacaactattattactggagaatagagatt |
45628341 |
T |
|
| Q |
301 |
aacgcatgtataatgagttaccaagatgagtgtagcaattgcctgaacaagctgatgaagcaaaacacctttcacaacagctttaaagggcaccaaattc |
400 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45628340 |
aacacatgtataatgagttaccaagatgagtgtagcaattgcctgaacaagctgatgaagcaaaacacctttcacaacagctttaaagggcaccaaattc |
45628241 |
T |
|
| Q |
401 |
ttcttttcttcattttaaggtacaaactcaacagcccctgatagccccttgaaatatttatgaactatgtatgcagaataat |
482 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45628240 |
ttcttttcttcattttaaggtacaaactcaacaacccctgatagccccttgaaatatttatgaactatgtatgcagcataat |
45628159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 30784782 - 30784312
Alignment:
| Q |
1 |
gggttatactgaattttggtaaaagtttattgttgggacttgaaggcagatcaatcaaactattacatagtgtgggaaatgactataactgaattcttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
30784782 |
gggttatactgaattttggtaaaagtttattgttgggact-gaatgcagatgaatcaaactattacatagtgtaagaaatgactata-ctgaattcttaa |
30784685 |
T |
|
| Q |
101 |
cagtatgttaataaatccgtttagctttaacagagtacacccaaaacataatgtgcataaaagttatcaagcaacacataatgcttataactaaaagtgc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
30784684 |
cagtatgttaataaatccgtttagctttaacagattacacccaaaacatagtgtgcataaaagttatcaagcaacacataa---------ctaaaagtgc |
30784594 |
T |
|
| Q |
201 |
ttttaacttaactacaaaacagaataagattttcaactataaactctattaactacaaatgtgaagtgtgaacaactattattactggagaatagagatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30784593 |
ttttaacttaactacaaaacagaataagattttcaactataaactctattaactacaaatgtgaagtgtgaacaactattattactggagaatagagatt |
30784494 |
T |
|
| Q |
301 |
aacgcatgtataatgagttaccaagatgagtgtagcaattgcctgaacaagctgatgaagcaaaacacctttcacaacagctttaaagggcaccaaattc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30784493 |
aacgcatgtataatgagttaccaagatgagtgcagcaattgcctgaacaagccgatgaagcaaaacacctttcacaacagctttaaagggcaccaaattc |
30784394 |
T |
|
| Q |
401 |
ttcttttcttcattttaaggtacaaactcaacagcccctgatagccccttgaaatatttatgaactatgtatgcagaataat |
482 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
30784393 |
ttcttttcttcattttaaggtacaaaatcaacagcccctgatagccccttgaaatatttatgaactatgtatgcagcataat |
30784312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 147 - 413
Target Start/End: Complemental strand, 43898227 - 43897961
Alignment:
| Q |
147 |
cataatgtgcataaaagttatcaagcaacacataatgcttataactaaaagtgcttttaacttaactacaaaacagaataagattttcaactataaactc |
246 |
Q |
| |
|
||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43898227 |
cataacgtgcacaaaagttatcaagcaacgcataatgcttataactaaaagtgcttttaacttaactacaaaacagaataagattttcaactataaactc |
43898128 |
T |
|
| Q |
247 |
tattaactacaaatgtgaagtgtgaacaactattattactggagaatagagattaacgcatgtataatgagttaccaagatgagtgtagcaattgcctga |
346 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| ||||||||||||||| | ||||||||||| |
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|
| T |
43898127 |
tattcactacaaatgtgaagtgtgaacaactatagttactggagaatagagattaacatgtgtagaatgacttaccaagatgagtgcaacaattgcctga |
43898028 |
T |
|
| Q |
347 |
acaagctgatgaagcaaaacacctttcacaacagctttaaagggcaccaaattcttcttttcttcat |
413 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
43898027 |
acaagctgctgaagcaaaacacctttcacaactgctttaaagggtaccaaattcttcttttcttcat |
43897961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 43903168 - 43903026
Alignment:
| Q |
1 |
gggttatactgaattttggtaaaagtttattgttgggacttgaaggcagatcaatcaaactattacatagtgtgggaaatgactataactgaattcttaa |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43903168 |
gggttatactgaattttagtaaaagtttattgttggga------ggcagatgaatcaaactattacatagtgtgggaaatgactataaccgaattcttaa |
43903075 |
T |
|
| Q |
101 |
cagtatgttaataaatccgtttagctttaacagagtacacccaaaacat |
149 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
43903074 |
cagtatgttaataaatccatttagctttaacagagtacacccaaaacat |
43903026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 43898815 - 43898678
Alignment:
| Q |
1 |
gggttatactgaattttggtaaaagtttattgttgggacttgaaggcagatcaatcaaactattacatagtgtgggaaatgactataactgaattcttaa |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
43898815 |
gggttatactgaattttcgaaaaagtttattgttggga------ggcagatgaataaaactattaca--gtgtgggaaatgactataactgaattcttaa |
43898724 |
T |
|
| Q |
101 |
cagtatgttaataaatccgtttagctttaacagagtacacccaaaa |
146 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43898723 |
cagtatgttaataaatccgtttctctttaacagagtacacccaaaa |
43898678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 482
Target Start/End: Complemental strand, 36322106 - 36322071
Alignment:
| Q |
447 |
ccttgaaatatttatgaactatgtatgcagaataat |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
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|
| T |
36322106 |
ccttgaaatatttatgaactatgtatgcagcataat |
36322071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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