View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15467_high_8 (Length: 302)
Name: NF15467_high_8
Description: NF15467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15467_high_8 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 302
Target Start/End: Complemental strand, 30420201 - 30419915
Alignment:
| Q |
16 |
atcatatggttggaatatatacacaaagagcaatgttggcaaccacccttgttagtatacctttatcatttattttggcatacttaaaaccgattttgat |
115 |
Q |
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| T |
30420201 |
atcatatggttggaatatatacacaaagagcaatgttggcaaccacccttgttagtatacctttatcatttattttggcatacttaaaaccgattttgat |
30420102 |
T |
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| Q |
116 |
aattttacgtcaagataaaactattgcagcacaagctcaactatttgctcgttactcaattccaagcctttcagccaatgcccttcttaggtgccttgtt |
215 |
Q |
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| T |
30420101 |
aattttacgtcaagacaaaactattgcagcacaagctcaactatttgctcgttactcaattccaagcctttcagccaatgcccttcttaggtgccttgtt |
30420002 |
T |
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| Q |
216 |
aaattcctacaaacacaaaatataatttttccaatggtgcttgctaatggagtcactagcttgatacatgtttttctatgttgggct |
302 |
Q |
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| T |
30420001 |
aaattcctacaaacacaaaatataatttttccaatggtgcttgctaatggagtcactagcttgatacatgtttttctatgttgggct |
30419915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 30437707 - 30437423
Alignment:
| Q |
16 |
atcatatggttggaatatatacacaaagagcaatgttggcaaccacccttgttagtatacctttatcatttattttggcatacttaaaaccgattttgat |
115 |
Q |
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| T |
30437707 |
atcatatggttggaatatatacacaaagggcaatgttggctaccaccattgttagtatacccttatcatttatttgggcatacttaaaacccattttgat |
30437608 |
T |
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| Q |
116 |
aattttacgtcaagataaaactattgcagcacaagctcaactatttgctcgttactcaattccaagcctttcagccaatgcccttcttaggtgccttgtt |
215 |
Q |
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| T |
30437607 |
aattttacatcaagacaaaactattgcaacacaagctcaactatttgctcgttattcaattccaagtctttctgccaatggtcttcttcgatgcattatt |
30437508 |
T |
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| Q |
216 |
aaattcctacaaacacaaaatataatttttccaatggtgcttgctaatggagtcactagcttgatacatgtttttctatgttggg |
300 |
Q |
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| T |
30437507 |
aaattcctacagacacaaaacattgtttttcctatggtgcttgctaatggattcattagcttaatacatgttattttatgctggg |
30437423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 30381407 - 30381124
Alignment:
| Q |
16 |
atcatatggttggaatatatacacaaagagcaatgttggcaaccacccttgttagtatacctttatcatttattttggcatacttaaaaccgattttgat |
115 |
Q |
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||||||||||||| ||||| ||||||||||| ||||||| |||||||||||||||||||| || ||| |||| | |||||||||| |||| |||||| | |
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| T |
30381407 |
atcatatggttggcatatacacacaaagagccatgttggttaccacccttgttagtatacccttgtcaattatatgggcatacttagaacctattttggt |
30381308 |
T |
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| Q |
116 |
aattttacgtcaagataaaactattgcagcacaagctcaactatttgctcgttactcaattccaagcctttcagccaatgcccttcttaggtgccttgtt |
215 |
Q |
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||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||| | ||||||| ||||||||||||| ||||| |
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| T |
30381307 |
gattttacatcaagaccaaactattgcagcacaagctcaattatttgctcgttactcaattcctagccttgctgccaatggccttcttaggtgcattgtt |
30381208 |
T |
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| Q |
216 |
aaattcctacaaacacaaaatataatttttccaatggtgcttgctaatggagtcactagcttgatacatgtttttctatgttgg |
299 |
Q |
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|||||| | ||||| ||||| ||| ||||||| |||||| | ||||||||| |||||| ||| ||||||| ||||||||||| |
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| T |
30381207 |
aaattcttgcaaactcaaaacatagtttttcccatggtgttggctaatggaatcactaccttagtacatgtccttctatgttgg |
30381124 |
T |
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