View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15467_low_1 (Length: 237)
Name: NF15467_low_1
Description: NF15467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15467_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3094537 - 3094757
Alignment:
| Q |
1 |
tcagatatcttatggtatttgattttttattaatttggagtgcaggtatatgggagtcaaaatattgagagagagatttgctgctgatgaaaccacttaa |
100 |
Q |
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| T |
3094537 |
tcagatatcttatggtacttgattttttattaatttggagtgcaggtatatgggagtcaaaatattgagagagagatttgctgatgatgaaaccacttaa |
3094636 |
T |
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| Q |
101 |
cattgtataaataaatttaacatatgatttttatctattgatgttcattaattgatgtatgatcactgagaaaatccactctagacttagattgtatcaa |
200 |
Q |
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| T |
3094637 |
tattgtataaataaatttaacatatgatttttatctattgatgttcattaattgatgtatggtcactgagaaaatccactctagacttagattgtatcaa |
3094736 |
T |
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| Q |
201 |
gttattattactccataatga |
221 |
Q |
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| T |
3094737 |
gttattattactccataatga |
3094757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 3085695 - 3085913
Alignment:
| Q |
5 |
atatcttatggtatttga--ttttttattaatttggagtgcaggtatatgggagtcaaaatattgagagagagatttgctgctgatgaaaccacttaaca |
102 |
Q |
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||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||| | |
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| T |
3085695 |
atatcttatggtacttgaatttttttattaatttggtgtgcaggtatatgggagtcagaatattgagagagagacttgctgctgatgaaaccaattaata |
3085794 |
T |
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| Q |
103 |
ttgtataaataaatttaacatatgatttttatctattgatgttcattaattgatgtatgatcactgagaaaatccactctagacttagattgtatcaagt |
202 |
Q |
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| T |
3085795 |
ttgtattgataaatttaatttttagtatttctctattcatgttcatcatttgatgtctagccactaagaaaatccactctagacttggattatttcaagt |
3085894 |
T |
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| Q |
203 |
tattattactccataatga |
221 |
Q |
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| T |
3085895 |
taatattactccacaatga |
3085913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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