View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15468_high_1 (Length: 335)
Name: NF15468_high_1
Description: NF15468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15468_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 317
Target Start/End: Complemental strand, 35206779 - 35206485
Alignment:
| Q |
11 |
tgagacggactctctatctctttttcacatgttcaagaaagaccatataaattacactcccttacttcttttgatcaatgaaattcgtgggttgcttcaa |
110 |
Q |
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| T |
35206779 |
tgagacggactctctatctctttttcacatgctcaagaaagaccatataaattatacttccttacttcttttgatcaatgaaattcgtgggttgcttcaa |
35206680 |
T |
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| Q |
111 |
agtagagattgtaataatacaatttgctttgctccttgagagacaaatccgtgtgtgcatatacttgtgcatatacttgcacaatgtctgtcatactact |
210 |
Q |
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| T |
35206679 |
agtagagattgtaataatacaatttgctttgctccttgagagacaaatccgtgtgtgcatata------------cttgcacaatgtc-gtcatactact |
35206593 |
T |
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| Q |
211 |
c-tttctatatcactttagttgactatgctccctccccctaacttggactgagatttgttgttgtagagaaacaacacaatttttaattataactattga |
309 |
Q |
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| T |
35206592 |
cttttctatatcactttagttgactatgctccctccccctaacttggaatgagatttgttgttgtagagaaacaacacaatttttaattataactattga |
35206493 |
T |
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Back To:
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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 42544972 - 42544845
Alignment:
| Q |
45 |
aagaaagaccatataaattacactcccttacttcttttgatcaatgaaattcgtgggttgcttcaaagtagagattgtaataatacaatttgctttgctc |
144 |
Q |
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||||||| ||||| ||||||| ||||||||||| ||||||||| |||||| ||| ||||| | |||||||| | ||| || |||||| |||| || |
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| T |
42544972 |
aagaaaggccatacaaattacgctcccttactttggttgatcaataaaattcatggtttgctctagagtagagactcaaatggtataatttgatttggtc |
42544873 |
T |
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| Q |
145 |
cttgagagacaaatccgtgtgtgcatat |
172 |
Q |
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| T |
42544872 |
ccaaagagacaaatcggtgtgtgcatat |
42544845 |
T |
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