View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15468_high_10 (Length: 324)

Name: NF15468_high_10
Description: NF15468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15468_high_10
NF15468_high_10
[»] chr5 (14 HSPs)
chr5 (1-318)||(23860971-23861288)
chr5 (1-318)||(23814038-23814355)
chr5 (1-318)||(23769588-23769908)
chr5 (1-318)||(23819436-23819756)
chr5 (8-318)||(23764212-23764522)
chr5 (5-222)||(23732051-23732267)
chr5 (1-286)||(23673555-23673840)
chr5 (48-159)||(23766854-23766965)
chr5 (48-159)||(23816702-23816813)
chr5 (39-115)||(11081805-11081881)
chr5 (183-318)||(23774201-23774335)
chr5 (1-63)||(23644474-23644536)
chr5 (5-71)||(23729330-23729396)
chr5 (190-318)||(23754168-23754300)
[»] chr3 (23 HSPs)
chr3 (39-149)||(3754558-3754668)
chr3 (39-109)||(4142117-4142187)
chr3 (45-107)||(2502148-2502210)
chr3 (45-107)||(2644351-2644413)
chr3 (45-107)||(2659141-2659203)
chr3 (51-107)||(2442039-2442095)
chr3 (49-109)||(4157937-4157997)
chr3 (44-150)||(2686300-2686409)
chr3 (51-133)||(803213-803295)
chr3 (51-109)||(2696727-2696785)
chr3 (42-107)||(792890-792955)
chr3 (48-157)||(956331-956440)
chr3 (48-157)||(1007411-1007520)
chr3 (48-157)||(1022439-1022548)
chr3 (38-118)||(989385-989465)
chr3 (39-107)||(7942485-7942553)
chr3 (56-107)||(37753345-37753396)
chr3 (45-107)||(7334228-7334290)
chr3 (56-133)||(1891064-1891141)
chr3 (44-133)||(2678387-2678476)
chr3 (44-133)||(3745982-3746071)
chr3 (58-107)||(13498224-13498273)
chr3 (55-119)||(2459263-2459327)
[»] chr4 (2 HSPs)
chr4 (34-156)||(22672105-22672227)
chr4 (51-128)||(20019767-20019844)
[»] chr8 (1 HSPs)
chr8 (48-157)||(19727831-19727940)
[»] chr2 (2 HSPs)
chr2 (54-107)||(7160752-7160805)
chr2 (55-107)||(36577366-36577418)
[»] chr1 (1 HSPs)
chr1 (39-108)||(51381438-51381507)


Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 23860971 - 23861288
Alignment:
Q  1 aaaatatgcattacatttgcaaagaaataataagatggcatgaaaggaatagtgaacaatttagtccaagacgccttattcccatactcctccataatcc 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||| |||| ||| ||||    
T  23860971 aaaatatgcattacattggcaaagaaataataagatggcatgaaaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatcc 23861070  T
Q  101 aaacatcattactagaaatcaagcacaaacaattccggaaaacactcaagtgcaaagtagatgaatctattgctctataatcataatcaggtagcaaaac 200  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  23861071 aaacatcattactagaaatccagcacaaacaattcctgaaaacactcaagtgcaaagtacgtgaatctattgctctataatcataatcaggtagcaaaac 23861170  T
Q  201 ttttttataagattcgtttcccaagtcaagagaagcaataaaactttgacctttactataatctttagaagccaaccaattaatcgtgtcattcacatat 300  Q
    |||||||||||| ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  23861171 ttttttataagactcgtttcccaaatcaaaagaagcaataaaacgttgacctttactataatctttagaagccaaccaattaatcgcgccattcacatat 23861270  T
Q  301 tttcccgatctctgctcc 318  Q
    ||||||||| ||||||||    
T  23861271 tttcccgatttctgctcc 23861288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 23814038 - 23814355
Alignment:
Q  1 aaaatatgcattacatttgcaaagaaataataagatggcatgaaaggaatagtgaacaatttagtccaagacgccttattcccatactcctccataatcc 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  ||||||| |||| ||| ||||    
T  23814038 aaaatatgcattacattggcaaagaaataataagatggcatgaaaggaatagtgaacaatttagtccaagacgctgtcatcccatattccttcattatcc 23814137  T
Q  101 aaacatcattactagaaatcaagcacaaacaattccggaaaacactcaagtgcaaagtagatgaatctattgctctataatcataatcaggtagcaaaac 200  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||    
T  23814138 aaacatcattactagaaatccagcacaaacaattcccgaaaacactcaagtgcaaagtaagtgaatctattgctctataatcacaatcaggtagcaaaac 23814237  T
Q  201 ttttttataagattcgtttcccaagtcaagagaagcaataaaactttgacctttactataatctttagaagccaaccaattaatcgtgtcattcacatat 300  Q
    |||||||||||| ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23814238 ttttttataagactcgtttcccaaatcaaaagaagcaataaaacgttgacctttactataatctttagaagccaaccaattaatcgtgccattcacatat 23814337  T
Q  301 tttcccgatctctgctcc 318  Q
    ||||| ||| ||||||||    
T  23814338 tttcctgatttctgctcc 23814355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 23769588 - 23769908
Alignment:
Q  1 aaaatatgcattacatttgcaaagaaat---aataagatggcatgaaaggaatagtgaacaatttagtccaagacgccttattcccatactcctccataa 97  Q
    ||||||||||||||||| ||||||| ||   ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||| |||||    
T  23769588 aaaatatgcattacattggcaaagagatgataataagatggcatgaaaggtatagtgaacaatttagtccaagacgctttattcccatattccttcataa 23769687  T
Q  98 tccaaacatcattactagaaatcaagcacaaacaattccggaaaacactcaagtgcaaagtagatgaatctattgctctataatcataatcaggtagcaa 197  Q
    ||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||  |||| | ||| |||||||||||||||| ||||||||    
T  23769688 tccaaacatcattactacaaatccagcacaaacaattcccgaaaacactcaagtgcaaagtacgtgaaccaatttctctataatcataatccggtagcaa 23769787  T
Q  198 aacttttttataagattcgtttcccaagtcaagagaagcaataaaactttgacctttactataatctttagaagccaaccaattaatcgtgtcattcaca 297  Q
    ||||||||||||||| ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23769788 aacttttttataagactcgtttcccaaatcaaaagaagcaataaaacgttgacctttactataatctttagaagccaaccaattaatcgtgccattcaca 23769887  T
Q  298 tattttcccgatctctgctcc 318  Q
    |||||||||||| ||||||||    
T  23769888 tattttcccgatttctgctcc 23769908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 23819436 - 23819756
Alignment:
Q  1 aaaatatgcattacatttgcaaagaaat---aataagatggcatgaaaggaatagtgaacaatttagtccaagacgccttattcccatactcctccataa 97  Q
    ||||||||||||||||| ||||||| ||   ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||| |||||    
T  23819436 aaaatatgcattacattggcaaagagatgataataagatggcatgaaaggtatagtgaacaatttagtccaagacgctttattcccatattccttcataa 23819535  T
Q  98 tccaaacatcattactagaaatcaagcacaaacaattccggaaaacactcaagtgcaaagtagatgaatctattgctctataatcataatcaggtagcaa 197  Q
    ||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||  |||| | ||| |||||||||||||||| ||||||||    
T  23819536 tccaaacatcattactacaaatccagcacaaacaattcccgaaaacactcaagtgcaaagtacgtgaaccaatttctctataatcataatccggtagcaa 23819635  T
Q  198 aacttttttataagattcgtttcccaagtcaagagaagcaataaaactttgacctttactataatctttagaagccaaccaattaatcgtgtcattcaca 297  Q
    ||||||||||||||| ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23819636 aacttttttataagactcgtttcccaaatcaaaagaagcaataaaacgttgacctttactataatctttagaagccaaccaattaatcgtgccattcaca 23819735  T
Q  298 tattttcccgatctctgctcc 318  Q
    |||||||||||| ||||||||    
T  23819736 tattttcccgatttctgctcc 23819756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 318
Target Start/End: Original strand, 23764212 - 23764522
Alignment:
Q  8 gcattacatttgcaaagaaataataagatggcatgaaaggaatagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatc 107  Q
    ||||| |||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||  ||||||| |||| ||| |||||||||||    
T  23764212 gcatttcattagaaaagaaataataagatggcatgaaaggaatagtgaacaatgtagtccaagacgctttcatcccatattccttcattatccaaacatc 23764311  T
Q  108 attactagaaatcaagcacaaacaattccggaaaacactcaagtgcaaagtagatgaatctattgctctataatcataatcaggtagcaaaactttttta 207  Q
    ||||||| ||||| ||||||||||||||||||||||| ||||||||||||||  |||||| | | |||||||||||||||| ||||||||||||||||||    
T  23764312 attactacaaatccagcacaaacaattccggaaaacaatcaagtgcaaagtacgtgaatcaaattctctataatcataatccggtagcaaaactttttta 23764411  T
Q  208 taagattcgtttcccaagtcaagagaagcaataaaactttgacctttactataatctttagaagccaaccaattaatcgtgtcattcacatattttcccg 307  Q
    ||||| ||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||  | | ||||||||||||||||||    
T  23764412 taagactcgtttcccaaatcaaaagaagcaataaaacattgacctttaccataatctttagaagccaaccaattaaaagcgccattcacatattttcccg 23764511  T
Q  308 atctctgctcc 318  Q
    || ||||||||    
T  23764512 atttctgctcc 23764522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 23732267 - 23732051
Alignment:
Q  5 tatgcattacatttgcaaagaaataataagatggcatg-aaaggaatagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaa 103  Q
    ||||||||||||| ||||||||||||||   ||||||| |||||||||||||||| |||| |||||||||| ||||||||||| |||| |||||||||||    
T  23732267 tatgcattacattggcaaagaaataata---tggcatggaaaggaatagtgaacagtttattccaagacgctttattcccatattccttcataatccaaa 23732171  T
Q  104 catcattactagaaatcaagcacaaacaattccggaaaacactcaagtgcaaagtagatgaatctattgctctataatcataatc-aggtagcaaaactt 202  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||||||| |||| | |||||||||||| ||| ||||||||||| ||| ||||||||||    
T  23732170 catcattactagaaatccaccacaaacaattcctgaaaacactcaagtggaaagaacatgaatctattgttctttaatcataatcaaggaagcaaaactt 23732071  T
Q  203 ttttataagattcgtttccc 222  Q
    |||||||||| |||||||||    
T  23732070 ttttataagactcgtttccc 23732051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 23673840 - 23673555
Alignment:
Q  1 aaaatatgcattacatttgcaaagaaataataagatggcatgaaaggaatagtgaacaatttagtccaagacgccttattcccatactcctccataatcc 100  Q
    ||||||||||||||||| |||||||||||||| ||||| | ||||||||| | ||||||||||| ||| || |  || |||  ||  |||| ||| ||||    
T  23673840 aaaatatgcattacattggcaaagaaataataggatgggaggaaaggaatggcgaacaatttagaccacgatgttttcttctaatcttccttcattatcc 23673741  T
Q  101 aaacatcattactagaaatcaagcacaaacaattccggaaaacactcaagtgcaaagtagatgaatctattgctctataatcataatcaggtagcaaaac 200  Q
    |||||||||||||||| ||| | || ||||| || | || |||||||| | |||||||   ||| ||| ||| ||||||||||||||| |||| ||||||    
T  23673740 aaacatcattactagacatccaccaaaaacacttgctgacaacactcaggagcaaagttcgtgattctgttgttctataatcataatctggtaacaaaac 23673641  T
Q  201 ttttttataagattcgtttcccaagtcaagagaagcaataaaactttgacctttactataatctttagaagccaaccaattaatcg 286  Q
    |||||||||||| ||| ||||||| |||| ||||| |||||||  ||||| |||||||| ||| ||||||||||||||||| ||||    
T  23673640 ttttttataagactcgcttcccaaatcaaaagaagaaataaaatgttgacttttactatgatcattagaagccaaccaattgatcg 23673555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 23766854 - 23766965
Alignment:
Q  48 aatagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatcattactagaaatcaagcacaaacaattccggaaaacactc 147  Q
    ||||||||||||||||||||||||| | ||||| ||||| || | |||||||||||||||||||| |||||  | |||||||||||||| | ||| ||||    
T  23766854 aatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcattaccagaaacgaggcacaaacaattcctgcaaaaactc 23766953  T
Q  148 aagtgcaaagta 159  Q
    ||||||||||||    
T  23766954 aagtgcaaagta 23766965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 23816702 - 23816813
Alignment:
Q  48 aatagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatcattactagaaatcaagcacaaacaattccggaaaacactc 147  Q
    ||||||||||||||||||||||||| | ||||| ||||| || | |||||||||||||||||||| |||||  | |||||||||||||| | ||| ||||    
T  23816702 aatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcattaccagaaacgaggcacaaacaattcctgcaaaaactc 23816801  T
Q  148 aagtgcaaagta 159  Q
    ||||||||||||    
T  23816802 aagtgcaaagta 23816813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 11081881 - 11081805
Alignment:
Q  39 catgaaaggaatagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatcattactag 115  Q
    |||| |||||||||| |||||||||||||||||| | ||||| |||||||||| ||||| ||||||||||| |||||    
T  11081881 catgtaaggaatagtaaacaatttagtccaagactctttatttccatactccttcataacccaaacatcatcactag 11081805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 318
Target Start/End: Original strand, 23774201 - 23774335
Alignment:
Q  183 ataatcaggtagcaaaacttttttataagattcgttt-cccaagtcaagagaagcaataaaactttgacctttactataatctttagaagccaaccaatt 281  Q
    |||||| |||| |||||||||||| ||||| | |||| ||| | |||| |||| || |||||| ||||| ||||| |||||||||| ||||||||| | |    
T  23774201 ataatcgggtaccaaaacttttttttaagacttgttttccccaatcaaaagaacca-taaaacgttgacttttac-ataatctttaaaagccaacccaat 23774298  T
Q  282 aatcgtgtcattcacatattttcccgatctctgctcc 318  Q
    | ||| | |||||||||||||||||||| ||||||||    
T  23774299 attcgcgccattcacatattttcccgatttctgctcc 23774335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 23644536 - 23644474
Alignment:
Q  1 aaaatatgcattacatttgcaaagaaataataagatggcatgaaaggaatagtgaacaattta 63  Q
    ||||||||||||||||| |||||||||||||||||||| |||| || ||| | ||||||||||    
T  23644536 aaaatatgcattacattggcaaagaaataataagatgggatgagagtaatggagaacaattta 23644474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 23729396 - 23729330
Alignment:
Q  5 tatgcattacatttgcaaagaaataataagatggcatgaaaggaatagtgaacaatttagtccaaga 71  Q
    ||||||||||| | ||||||| ||||||||||||  |||||||| |||||| |||||||||||||||    
T  23729396 tatgcattacaatggcaaagagataataagatgggttgaaaggagtagtgagcaatttagtccaaga 23729330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 318
Target Start/End: Original strand, 23754168 - 23754300
Alignment:
Q  190 ggtagcaaaac-ttttttataag-attcgtttcccaagtcaagagaagc-aataaaactttgacctttactataatctttagaag-ccaaccaattaatc 285  Q
    ||||||||||| |||||| |||| | ||||||||| | |||| |||| | |||||||| ||| ||||| || || ||||| |||| |||||||||| |||    
T  23754168 ggtagcaaaactttttttttaagaactcgtttccccaatcaaaagaaacaaataaaacgttgcccttttctttattctttggaagcccaaccaatttatc 23754267  T
Q  286 gtgtcattcacatattttcccgatctctgctcc 318  Q
    ||| ||||||||| |||||||||| | ||||||    
T  23754268 gtgccattcacattttttcccgatttttgctcc 23754300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 149
Target Start/End: Complemental strand, 3754668 - 3754558
Alignment:
Q  39 catgaaaggaatagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatcattactagaaatcaagcacaaacaattccgg 138  Q
    |||| |||||||||| |||||||||||||||||| | ||||| ||||| |||| ||||| ||||||||||  || |||| ||| |||||| |||| ||      
T  3754668 catgcaaggaatagtaaacaatttagtccaagactctttatttccatattccttcataacccaaacatcaacaccagaagtcacgcacaagcaatccctc 3754569  T
Q  139 aaaacactcaa 149  Q
    |||||||||||    
T  3754568 aaaacactcaa 3754558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 4142117 - 4142187
Alignment:
Q  39 catgaaaggaatagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatcat 109  Q
    |||| ||||||||||||||||||||||||||||| | ||||| ||||| |||| ||||| |||||||||||    
T  4142117 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 4142187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 2502210 - 2502148
Alignment:
Q  45 aggaatagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatc 107  Q
    |||||||||| ||| |||||||||| || ||||||| |||||||||| |||||||||||||||    
T  2502210 aggaatagtgtacagtttagtccaaaactccttatttccatactccttcataatccaaacatc 2502148  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 2644351 - 2644413
Alignment:
Q  45 aggaatagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatc 107  Q
    |||||||||| ||||||||||||||||| | | ||| |||||||||| |||||||||||||||    
T  2644351 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2644413  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 2659141 - 2659203
Alignment:
Q  45 aggaatagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatc 107  Q
    |||||||||| ||||||||||||||||| | | ||| |||||||||| |||||||||||||||    
T  2659141 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2659203  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 2442095 - 2442039
Alignment:
Q  51 agtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatc 107  Q
    |||||||||||||||||||||  | ||||| |||||||||| |||||||||||||||    
T  2442095 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 2442039  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 4157937 - 4157997
Alignment:
Q  49 atagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatcat 109  Q
    |||||||||||||||||||||||| | ||||| ||||| |||| ||||| |||||||||||    
T  4157937 atagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 4157997  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 2686300 - 2686409
Alignment:
Q  44 aaggaatagtgaacaatttagtccaagacgccttattcccatactcctccataat---ccaaacatcattactagaaatcaagcacaaacaattccggaa 140  Q
    |||||||||||||||||||| |||||||| | || || ||||| |||| ||||||   ||||||||||| || | | |||||||||||||||| ||  ||    
T  2686300 aaggaatagtgaacaatttattccaagactctttttttccatattccttcataataacccaaacatcatcaccacagatcaagcacaaacaatccctcaa 2686399  T
Q  141 aacactcaag 150  Q
    ||||| ||||    
T  2686400 aacacccaag 2686409  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 803213 - 803295
Alignment:
Q  51 agtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatcattactagaaatcaagcacaaacaat 133  Q
    ||||||||| |||||||||||| | ||||| ||||| || | ||||| ||||||||||| || |||||||| |||||| ||||    
T  803213 agtgaacaacttagtccaagactctttatttccatattctttcataacccaaacatcatcaccagaaatcatgcacaagcaat 803295  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 2696727 - 2696785
Alignment:
Q  51 agtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatcat 109  Q
    ||||||||||||| |||||||| | ||||| ||||| |||| |||||||||||||||||    
T  2696727 agtgaacaatttaatccaagactctttatttccatattccttcataatccaaacatcat 2696785  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 792890 - 792955
Alignment:
Q  42 gaaaggaatagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatc 107  Q
    ||||||||||||||| |||||| |||||||  |||  || |||||||||| |||||||||||||||    
T  792890 gaaaggaatagtgaataatttactccaagattcctctttaccatactccttcataatccaaacatc 792955  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 956440 - 956331
Alignment:
Q  48 aatagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatcattactagaaatcaagcacaaacaattccggaaaacactc 147  Q
    |||| |||||||||||  ||||||| | || || ||||| |||| |||||||||||||||   || | |||||| |||||| |||| || ||||||||||    
T  956440 aataatgaacaatttatgccaagactctttttttccatattccttcataatccaaacatcgcaaccaaaaatcatgcacaagcaatccctgaaaacactc 956341  T
Q  148 aagtgcaaag 157  Q
    |||| |||||    
T  956340 aagttcaaag 956331  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 1007520 - 1007411
Alignment:
Q  48 aatagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatcattactagaaatcaagcacaaacaattccggaaaacactc 147  Q
    ||||||||||||||||||||| ||| | ||||| ||||| |||| ||| | ||||||||||| || | ||| || |  ||| |||| ||  |||||||||    
T  1007520 aatagtgaacaatttagtccaggactcgttatttccatattccttcattacccaaacatcatcaccacaaaacacggtcaagcaatccctaaaaacactc 1007421  T
Q  148 aagtgcaaag 157  Q
    ||||||||||    
T  1007420 aagtgcaaag 1007411  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 1022548 - 1022439
Alignment:
Q  48 aatagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatcattactagaaatcaagcacaaacaattccggaaaacactc 147  Q
    ||||||||||||||||||||| ||| | ||||| ||||| |||| ||| | ||||||||||| || | ||| || |  ||| |||| ||  |||||||||    
T  1022548 aatagtgaacaatttagtccatgactcgttatttccatattccttcattacccaaacatcatcaccacaaaacacggtcaagcaatccctaaaaacactc 1022449  T
Q  148 aagtgcaaag 157  Q
    ||||||||||    
T  1022448 aagtgcaaag 1022439  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 989465 - 989385
Alignment:
Q  38 gcatgaaaggaatagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatcattactagaaa 118  Q
    ||||| ||| ||||||||||||||||||||||||| | ||||| || ||||| | ||| | ||||||||||| || |||||    
T  989465 gcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcaccagaaa 989385  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 7942553 - 7942485
Alignment:
Q  39 catgaaaggaatagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatc 107  Q
    |||| |||||| | || |||||||| |||||||| | ||||| |||||||||| |||||||||||||||    
T  7942553 catgtaaggaacattgtacaatttaatccaagactctttattaccatactccttcataatccaaacatc 7942485  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 37753345 - 37753396
Alignment:
Q  56 acaatttagtccaagacgccttattcccatactcctccataatccaaacatc 107  Q
    ||||||||||||||||| | || || ||||| ||||||||||||||||||||    
T  37753345 acaatttagtccaagactctttctttccatattcctccataatccaaacatc 37753396  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 7334228 - 7334290
Alignment:
Q  45 aggaatagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatc 107  Q
    |||||||||| ||||||||||||||||| | ||||| || || |||| ||| |||||||||||    
T  7334228 aggaatagtgtacaatttagtccaagactctttatttccgtagtccttcatgatccaaacatc 7334290  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 1891064 - 1891141
Alignment:
Q  56 acaatttagtccaagacgccttattcccatactcctccataatccaaacatcattactagaaatcaagcacaaacaat 133  Q
    ||||||||||||||||  | ||||| ||||  |||| ||||||||||||||||| || | ||| || |||||||||||    
T  1891064 acaatttagtccaagagtctttatttccatgttccttcataatccaaacatcatgaccaaaaaccaggcacaaacaat 1891141  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 2678387 - 2678476
Alignment:
Q  44 aaggaatagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatcattactagaaatcaagcacaaacaat 133  Q
    ||||||||||||||||||||||||| ||| | || || ||||| |  | ||||| ||||||||||| || | || |||||||||| ||||    
T  2678387 aaggaatagtgaacaatttagtccatgactctttttttccatattgtttcataacccaaacatcatcaccacaagtcaagcacaagcaat 2678476  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 3746071 - 3745982
Alignment:
Q  44 aaggaatagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatcattactagaaatcaagcacaaacaat 133  Q
    |||||||||| |||||||||||||||||| | |  ||  |||| |||| ||||||||||| ||||| || |||| ||| |||||| ||||    
T  3746071 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaat 3745982  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 13498273 - 13498224
Alignment:
Q  58 aatttagtccaagacgccttattcccatactcctccataatccaaacatc 107  Q
    ||||||||||||||| | ||||| ||||| |||| |||||||||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatc 13498224  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 2459327 - 2459263
Alignment:
Q  55 aacaatttagtccaagacgccttattcccatactcctccataatccaaacatcattactagaaat 119  Q
    |||||||| ||||||||| | ||||| ||||| |||| ||||||||||||| ||| || ||||||    
T  2459327 aacaattttgtccaagactctttatttccatattccttcataatccaaacaacatgaccagaaat 2459263  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 22672105 - 22672227
Alignment:
Q  34 gatggcatgaaaggaatagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatcattactagaaatcaagcacaaacaat 133  Q
    ||||||||| ||| ||||||||||||||||||||||||  ||||||| ||||| |||| ||| | |||||| || | || ||||| ||||  ||| ||||    
T  22672105 gatggcatgtaagaaatagtgaacaatttagtccaagattccttatttccatattccttcattacccaaacgtcgtcaccagaaaacaagatcaagcaat 22672204  T
Q  134 tccggaaaacactcaagtgcaaa 156  Q
     || || |||||||||| |||||    
T  22672205 ccctgagaacactcaagagcaaa 22672227  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 20019767 - 20019844
Alignment:
Q  51 agtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatcattactagaaatcaagcacaa 128  Q
    |||||||||||||||||||||| | | | | ||||| |||| ||| | |||||||||||||| |||||| | ||||||    
T  20019767 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaa 20019844  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 19727940 - 19727831
Alignment:
Q  48 aatagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatcattactagaaatcaagcacaaacaattccggaaaacactc 147  Q
    ||||||||||| ||||||||| ||| | |||||  |||| ||   ||||| ||||||||||| || ||||| || |||||||||||| || || |||| |    
T  19727940 aatagtgaacagtttagtccatgactctttatttgcatattctgtcataacccaaacatcatcaccagaaaccatgcacaaacaatttcgcaacacaccc 19727841  T
Q  148 aagtgcaaag 157  Q
    || |||||||    
T  19727840 aaatgcaaag 19727831  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 7160752 - 7160805
Alignment:
Q  54 gaacaatttagtccaagacgccttattcccatactcctccataatccaaacatc 107  Q
    ||||||||||||||||||  | ||||| |||||||||| ||||| |||||||||    
T  7160752 gaacaatttagtccaagaatcattatttccatactccttcataagccaaacatc 7160805  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 36577418 - 36577366
Alignment:
Q  55 aacaatttagtccaagacgccttattcccatactcctccataatccaaacatc 107  Q
    ||||||||| |||||||| | ||||| ||||| |||| |||||||||||||||    
T  36577418 aacaatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 51381438 - 51381507
Alignment:
Q  39 catgaaaggaatagtgaacaatttagtccaagacgccttattcccatactcctccataatccaaacatca 108  Q
    |||| |||||||| |||||||||||||||||||| | | ||| ||||| || | ||||||||||| ||||    
T  51381438 catgtaaggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatca 51381507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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