View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15468_high_13 (Length: 311)
Name: NF15468_high_13
Description: NF15468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15468_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 116 - 305
Target Start/End: Original strand, 51064130 - 51064319
Alignment:
| Q |
116 |
gaccaagattgtatgcttacctgtgagtgccttcaatgcaaaaacccaaaagtctaaccaaattcttgtgcctcacatgaccaatagcctcaacttccac |
215 |
Q |
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| T |
51064130 |
gaccaagattgtatgcttacctgtgagtgccttcaatgcaaaaacccaaaagtctaaccaaattcttgtgcctcacatgaccaatagcctcaacttccac |
51064229 |
T |
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| Q |
216 |
tcgaaattctttttcagcttgtccactgcatgatgaccataaatgatgttataaactagctgcttcaaaatatgctaataaaacatgaaa |
305 |
Q |
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| T |
51064230 |
tctaaattctttttcagcttgtccactgcatgatgaccataaatgatgttataaactagctgcttcaaaatatgctaataaaacatgaaa |
51064319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 51064025 - 51064063
Alignment:
| Q |
11 |
cacagaaacgaccgtgatgattcacctctttgctgattc |
49 |
Q |
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| T |
51064025 |
cacagaaacgaccgtgatgattcacctctttgctgattc |
51064063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 133 - 248
Target Start/End: Complemental strand, 20216985 - 20216870
Alignment:
| Q |
133 |
tacctgtgagtgccttcaatgcaaaaacccaaaagtctaaccaaattcttgtgcctcacatgaccaatagcctcaacttccactcgaaattctttttcag |
232 |
Q |
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||||||||||||||||| ||||||||||||||||| | |||||| ||||| |||| ||||||||||||||||||||||||||| | |||||| ||||||| |
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| T |
20216985 |
tacctgtgagtgccttcgatgcaaaaacccaaaagccgaaccaagttcttatgccgcacatgaccaatagcctcaacttccaccctaaattccttttcag |
20216886 |
T |
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| Q |
233 |
cttgtccactgcatga |
248 |
Q |
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| T |
20216885 |
cttgtcctctgcatga |
20216870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 45859819 - 45859716
Alignment:
| Q |
133 |
tacctgtgagtgccttcaatgcaaaaacccaaaagtctaaccaaattcttgtgcctcacatgaccaatagcctcaacttccactcgaaattctttttcag |
232 |
Q |
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||||||||||| || || | ||| || |||||||||| |||||| || ||||| || |||||||||||||| ||||||||||||| ||||||||| || | |
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| T |
45859819 |
tacctgtgagttccctcgacgcagaaccccaaaagtcgaaccaagtttttgtgtctgacatgaccaatagcttcaacttccactctaaattctttctctg |
45859720 |
T |
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| Q |
233 |
cttg |
236 |
Q |
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|||| |
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| T |
45859719 |
cttg |
45859716 |
T |
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