View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15468_high_5 (Length: 352)
Name: NF15468_high_5
Description: NF15468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15468_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 22 - 352
Target Start/End: Original strand, 53597406 - 53597736
Alignment:
| Q |
22 |
catcatcacacacaactcttgcacaaccaattcttctagtacttttccacacaatctgagtataatgtccacacatttgaccagatacacatgaattagt |
121 |
Q |
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| T |
53597406 |
catcatcacacacaactcttgcacaaccaattcttctagtacttttccacacaatctgagtataatgtccacacatttgaccagatacacatgaattagt |
53597505 |
T |
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| Q |
122 |
cacatatgtgtaatatttctcttcatcagcccaagcttttacagcatccgttggtgtccaatcagagccactaccccaatatatattctctcctaatttg |
221 |
Q |
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| T |
53597506 |
cacatatgtgtaatatttctcttcatcagcccaagcttttacagcatccgttggtgtccaatcagagccactaccccaatatatattctctcctaatttg |
53597605 |
T |
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| Q |
222 |
aaaccatcttcaggaaaagaatgttccactttgcaatctggttttctttgactagcccaccaccttgcatattgttcaagctggtaatcccacatcagtg |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53597606 |
aaaccatcttcaggaaaagaatgttccactttgcaatctggttttctttgactagcccaccaccttgcatattgttcaagctggtaatcccacatcagtg |
53597705 |
T |
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| Q |
322 |
gaagttcccattttgatgctcttaccaagtt |
352 |
Q |
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|||||||||||||||| |||||||||||||| |
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| T |
53597706 |
gaagttcccattttgaagctcttaccaagtt |
53597736 |
T |
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