View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15469_low_2 (Length: 527)
Name: NF15469_low_2
Description: NF15469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15469_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Complemental strand, 3601996 - 3601498
Alignment:
| Q |
18 |
gtagtttccgccgaacattaaaattacaaaagaaattgcattgtggaacataaaatttatattgatgagaagcccacttatggctaattcatattcaaaa |
117 |
Q |
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| T |
3601996 |
gtagtttccgccgaacattaaaattacaaaagaaattgcattgtggaacataaaatttatattgatgagaagcccacttatggctaattcatattcaaaa |
3601897 |
T |
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| Q |
118 |
gtttagttacgaaagaaatatttatttgaaaaacataatactccaagccatttgtttggataatcaaagtccagtctgataattggttgataaatgttat |
217 |
Q |
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| T |
3601896 |
gtttagtcacgaaagaaatatttatttgaaaagcataatactccaagccatttgtttggataatcaaagtccagtctgatacttggttgataaatgttat |
3601797 |
T |
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| Q |
218 |
aactatcattccccaatccgtgaatgtaattctcaaaatgtccaaaataattttctagaaacttagaagcgtagaagggaaaaatatgtatccacaatac |
317 |
Q |
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|||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3601796 |
aactatcattacccaatccatgaacgtaattctcaaaatgtccaaaataattttctagaaacttagaagcgtagaagggaaaaatatgtttccacaatac |
3601697 |
T |
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| Q |
318 |
ggttggtcatgaaaaggtgtaaaaaatcaggagagaaaggaatgtataatgcctctaatgtcccaacataaagataagataagtgctgaagattcaatgg |
417 |
Q |
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| T |
3601696 |
ggttggtcatgaaaaggtgtaaaaaatcaggagaggaaggaatgtataatgcctctaatgtcccaacataaagataagataagtgctgaagattcaatgg |
3601597 |
T |
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| Q |
418 |
gttcattaaaacaat-nnnnnnnngaagttcataactatatctacannnnnnnaaatgaactatatcttcattaaaatacataaaaccatggttgatga |
515 |
Q |
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| T |
3601596 |
gttcattaaaacaataaaaaaaaagaagctcataactatatctacatttttttaaatgaactatatcttcattaaaatacataaaaccatggttgatga |
3601498 |
T |
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