View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15469_low_3 (Length: 502)
Name: NF15469_low_3
Description: NF15469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15469_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 32988670 - 32988203
Alignment:
| Q |
18 |
ggacggtggtgaaacatggcaagtatgcacattggaccattcagaaaaaccaaacaagtacggtaagtactggtgctggtgcttttggtccttggaagtt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32988670 |
ggacggtggtgaaacatggcaagtatgcacattggaccattcagaaaaaccaaacaagtacggtaagtactggtgctggtgcttttggtccttggaagtt |
32988571 |
T |
|
| Q |
118 |
gaagtgttggaccttctaggagccaaggatattgctgtacgagcttgggatgagtccctcaacacccaacctcagaacctcatttggaatctcatggcaa |
217 |
Q |
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| T |
32988570 |
gaagtgttggaccttctaggagccaaggatattgctgtacgagcttgggatgagtccctcaacacccaacctcagaacctcatttggaatctcatggcaa |
32988471 |
T |
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| Q |
218 |
gtgcacatactccaaaccttgtaacttagtactagctccggtacaatatataagaaaaaattaagtctacaaaagttaacgtatttggtcttaaatttgg |
317 |
Q |
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| T |
32988470 |
gtacacatactccaaaccttgtaacttagtactagctccggtacaatatataagaaaaaattaagtctacaaaagttaacgtatttggtcaaaaatttgg |
32988371 |
T |
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| Q |
318 |
ttcaaatatatcaatttttattgactgagggcgtaaatcacgttaaaactttgctttaataaagcatctgaattaacaagcttttactatgcatttgttc |
417 |
Q |
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| T |
32988370 |
ttcaaatatatcaatttttattaactgagggcgtaaatcacgttaaaactttgctttaataaagcatctgaattaacaagcttttactatgcatttgttc |
32988271 |
T |
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| Q |
418 |
agggcatgatgaataactgctggttcaaagtgaaatcaagtttatgcaaagctaacaagggtgaaatt |
485 |
Q |
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| T |
32988270 |
agggcatgatgaataactgctggttcaaagtgaaatcaagtttatgcaaagctaacaagggtgaaatt |
32988203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 32960184 - 32960034
Alignment:
| Q |
18 |
ggacggtggtgaaacatggcaagtatgcacattggaccattcagaaaaaccaaacaagtacggtaagtactggtgctggtgcttttggtccttggaagtt |
117 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| ||| ||| ||||||| ||| || || || || ||||| |||||||||||||| || || ||| |
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| T |
32960184 |
ggacggtggtgaaacatggcaagtatgcaaattggagcatcaagagaaaccaagcaaatatggaaaatattggtgttggtgcttttggtctttagaggtt |
32960085 |
T |
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| Q |
118 |
gaagtgttggaccttctaggagccaaggatattgctgtacgagcttgggat |
168 |
Q |
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| T |
32960084 |
gaagtgttagacttttttggagccaaagagattgcagtacgtgcatgggat |
32960034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 24863685 - 24863496
Alignment:
| Q |
18 |
ggacggtggtgaaacatggcaagtatgcacattggaccattcagaaaaaccaaacaagtacggtaagtactggtgctggtgcttttggtccttggaagtt |
117 |
Q |
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||||||||| ||||||||||| || ||||||||||||||| |||||||||||| || || || || || ||||| |||||||||||||| |||||||| |
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| T |
24863685 |
ggacggtggagaaacatggcacgtgtgcacattggaccatccagaaaaaccaacaaaatatggaaaatattggtgttggtgcttttggtctctggaagtt |
24863586 |
T |
|
| Q |
118 |
gaagtgttggaccttctaggagccaaggatattgctgtacgagcttgggatgagtccctcaacacccaacctcagaacctcatttggaat |
207 |
Q |
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|| ||| |||||||||| ||| ||||||| ||||||||| |||| ||||||||| | ||||||||||||||| | || |||||||||||| |
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| T |
24863585 |
gaggtgctggaccttcttggaaccaaggagattgctgtaagagcatgggatgaggcactcaacacccaacctgaaaatctcatttggaat |
24863496 |
T |
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