View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15469_low_4 (Length: 400)
Name: NF15469_low_4
Description: NF15469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15469_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 20 - 392
Target Start/End: Complemental strand, 3745178 - 3744806
Alignment:
| Q |
20 |
gggtttagatgctccagtgctacacgctttgcaccagatgatggatctttcagatgacaatgtggagaagacatcatcacacaatgctccaactagatcc |
119 |
Q |
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| T |
3745178 |
gggtttggatgctccagtgctacacgctcttcaccaaatgatggacctttcagatgacaatatggagaagacatcatcacacaatgctccaactagatcc |
3745079 |
T |
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| Q |
120 |
tatgttagagatgccaaggcaatggctgctactcctgcagatattaaggaagatcagaattcatacgtgttcgtgattgacatgccaggattgaaatctg |
219 |
Q |
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| T |
3745078 |
tatgttagagatgccaaggcaatggctgctactcctgcagatattaaggaagatcagaattcatacgtgttcgtgattgacatgccaggattgaaatctg |
3744979 |
T |
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| Q |
220 |
gggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaagagggaagaagagaaagaaggtggtgcaaagtatttgagaat |
319 |
Q |
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| T |
3744978 |
gggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaagagggaagaagagaaagaaggtggtgcaaagtatttgagaat |
3744879 |
T |
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| Q |
320 |
ggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgctaatactgatgctgtctctgct |
392 |
Q |
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| T |
3744878 |
ggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgctaatactgatgctgtttctgct |
3744806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 180 - 371
Target Start/End: Complemental strand, 48303219 - 48303031
Alignment:
| Q |
180 |
tcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaaga |
279 |
Q |
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| T |
48303219 |
tcatacgtgttcgtggtggacatgccagggttgaaatctggtgacatcaaggttcaggttgaagatgagaatgtgcttctgataagcggtgaaaggaaga |
48303120 |
T |
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| Q |
280 |
gggaagaagagaaagaaggtggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgct |
371 |
Q |
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| T |
48303119 |
gagaagaagagaaagaaggtggt---aaatatttgaagatggaaagaagggttggtaagtttatgaggaaatttgtgttaccagagaatgct |
48303031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 180 - 288
Target Start/End: Original strand, 10462162 - 10462270
Alignment:
| Q |
180 |
tcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaaga |
279 |
Q |
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|||| ||| |||| ||| ||| |||| |||||||||||||| ||||| |||||| |||| ||||||||||| ||| ||||||||| ||| |||||||||| |
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| T |
10462162 |
tcattcgtattcgagatggacttgccgggattgaaatctggtgatatcaaggttgaggttgaagatgataaagtggttgtgataaccggcgagaggaaga |
10462261 |
T |
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| Q |
280 |
gggaagaag |
288 |
Q |
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| T |
10462262 |
gggaagaag |
10462270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 165 - 288
Target Start/End: Complemental strand, 10539977 - 10539854
Alignment:
| Q |
165 |
aaggaagatcagaattcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataa |
264 |
Q |
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| T |
10539977 |
aaggaatatcaaaactcgtacgtgttcgagacagatatgctgggaatgaaatctgatgatatcaaggttgaggttgaagatgataatgtggttgtgataa |
10539878 |
T |
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| Q |
265 |
gcggagagaggaagagggaagaag |
288 |
Q |
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||| ||||||||||||||||||| |
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| T |
10539877 |
ccggcgagaggaagagggaagaag |
10539854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 322
Target Start/End: Complemental strand, 10543543 - 10543464
Alignment:
| Q |
243 |
gatgataacgtgcttgtgataagcggagagaggaagagggaagaagagaaagaaggtggtgcaaagtatttgagaatgga |
322 |
Q |
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||||| || ||| |||||||||| ||||| ||||||||||||||||| ||||| |||| ||||||||||||||||| |
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| T |
10543543 |
gatgaaaatgtggttgtgataagtggagaaaggaagagggaagaagaagtagaagaaggtgttaagtatttgagaatgga |
10543464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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