View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15469_low_5 (Length: 381)
Name: NF15469_low_5
Description: NF15469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15469_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 35071297 - 35071509
Alignment:
| Q |
14 |
catcatcatcgcgatcatcgccgccaccttcgtggtggccgacgatgacgccaccgtcatgcaaagccttcggcaatcccttaaaccttctcctaacggc |
113 |
Q |
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| T |
35071297 |
catcatcatcgcgatcatcgccgccaccttcgtggtggccgacgatgacggcaccgtcatgcaaagccttcggcaatcccttaaaccttctcctaacggc |
35071396 |
T |
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| Q |
114 |
tggtcttccaatacttccttctgtcaatggtccggcgtcaaatgctcatccgacaaccgcgtcaccagcataaacctctccgatcaaaagcttgccggta |
213 |
Q |
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| T |
35071397 |
tggtcttccaatacttccttctgtcaatggtccggcgtcaaatgctcatccgacaaccgcgtcaccagcataaacctctccgatcaaaagctcgccggaa |
35071496 |
T |
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| Q |
214 |
cccttcccgataa |
226 |
Q |
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| T |
35071497 |
cccttcccgataa |
35071509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 35071601 - 35071645
Alignment:
| Q |
318 |
acagacgttaatctcggcagtaacaacttctcctcggtaactccc |
362 |
Q |
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| T |
35071601 |
acagacgttaatctcggcagcaataacttctcctccgtaactccc |
35071645 |
T |
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