View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15469_low_6 (Length: 256)
Name: NF15469_low_6
Description: NF15469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15469_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 50826996 - 50827221
Alignment:
| Q |
13 |
aatataggatggtttatacgacttgttataacaaatttttcaggagcaaccgaggaaatcctagttagatgagattttggagcaacgttcttgcgatgaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50826996 |
aatataggatggtttatacgacttgttataacaaatttttcaggagcaaccgaggaaatcctagttagatgagattttggagcaacgttcttgcgatgaa |
50827095 |
T |
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| Q |
113 |
ttgagttatcaactgcatattcatgcacatactttaagttacaaacagcctaacattatgatcggttaaaaaatataaacatattagaatatgctcaccg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50827096 |
ttgagttatcaactgcatattcatgcacatactttaagttacaaatagcctaacattatgatcggttaaaaaatataaacatattagaatatgctcaccg |
50827195 |
T |
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| Q |
213 |
ttgctaatatcagacaatggatgacc |
238 |
Q |
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|||||||||||||||||||||||||| |
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| T |
50827196 |
ttgctaatatcagacaatggatgacc |
50827221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 50848857 - 50848632
Alignment:
| Q |
13 |
aatataggatggtttatacgacttgttataacaaatttttcaggagcaaccgaggaaatcctagttagatgagattttggagcaacgttcttgcgatgaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50848857 |
aatataggatggtttatacgacttgttataacaaatttttcaggagcaaccgaggaaatcctagttagatgagattttggagcaacgttcttgcgatgaa |
50848758 |
T |
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| Q |
113 |
ttgagttatcaactgcatattcatgcacatactttaagttacaaacagcctaacattatgatcggttaaaaaatataaacatattagaatatgctcaccg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50848757 |
ttgagttatcaactgcatattcatgcacatactttaagttacaaatagcctaacattatgatcggttaaaaaatataaacatattagaatatgctcaccg |
50848658 |
T |
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| Q |
213 |
ttgctaatatcagacaatggatgacc |
238 |
Q |
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||||||||||||||||||||| |||| |
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| T |
50848657 |
ttgctaatatcagacaatggaagacc |
50848632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 25436954 - 25436732
Alignment:
| Q |
16 |
ataggatggtttatacgacttgttataacaaatttttcaggagcaaccgaggaaatcctagttagatgagattttggagcaacgttcttgcgatgaattg |
115 |
Q |
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||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25436954 |
ataggatggcttatacgacttgttataacaaattttccaggagcaaccggggaaatcctagttagatgagattttggagcaacgttcttgcgatgaattg |
25436855 |
T |
|
| Q |
116 |
agttatcaactgcatattcatgcacatactttaagttacaaacagcctaacattatgatcggttaaaaaatataaacatattagaatatgctcaccgttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
25436854 |
agttatcaactgcatattcatgcacatactttaagttacaaacagcctaacattatgatcggttaaaaaatataaacagattagaatttgctcaccgttg |
25436755 |
T |
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| Q |
216 |
ctaatatcagacaatggatgacc |
238 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
25436754 |
ctaatatcagacaatggacgacc |
25436732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 8371457 - 8371674
Alignment:
| Q |
21 |
atggtttatacgacttgttataacaaatttttcaggagcaaccgaggaaatcctagttagatgagattttggagcaacgttcttgcgatgaattgagtta |
120 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8371457 |
atggcttatacgacttgttataacaaattttccaggagcaaccggggaaatcctagttagatgagattttggagcaacgttcttgcgatgaattgagtta |
8371556 |
T |
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| Q |
121 |
tcaactgcatattcatgcacatactttaagttacaaacagcctaacattatgatcggttaaaaaatataaacatattagaatatgctcaccgttgctaat |
220 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8371557 |
tcatctgcatattcatgcacatactttaagttacaaacagcctaacattatgatcggttaaaaaatataaacatattagaatatgctcaccgttgctaat |
8371656 |
T |
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| Q |
221 |
atcagacaatggatgacc |
238 |
Q |
| |
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||||||||||||| |||| |
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| T |
8371657 |
atcagacaatggacgacc |
8371674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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