View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1546_high_1 (Length: 416)
Name: NF1546_high_1
Description: NF1546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1546_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 31652096 - 31652497
Alignment:
| Q |
1 |
tgatatgaagttgatattggagttcacnnnnnnngtaattcgatgatacagttcagatgtcgaagaagggggtgagacggtgtttccaaatgccaaggga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31652096 |
tgatatgaagttgatattggagttcactttttttgtaattcgatgatacagttcagatgtcgaagaagggggtgagacggtgtttccaaatgccaaggga |
31652195 |
T |
|
| Q |
101 |
aattttagctctgtgccttggtggaatgagctttccgattgtggaaaaggaggactatcaattaagccaaagatgggtaatgctatacttttctggagca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31652196 |
aattttagctctgtgccttggtggaatgagctttccgattgtggaaaaggaggactatcaattaagccaaagatgggtaatgctatacttttctggagca |
31652295 |
T |
|
| Q |
201 |
tgaagcctgatgcaactttagatccatcgagtttgcacggtaaagtcttcttttattactatcaatcttaaaagcattaaagtgtgcttgtgttaatgag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31652296 |
tgaagcctgatgcaactttagatccatcgagtttgcacggtaaagtcttcttttattactatcaatcttaaaaacattaaagtgtgcttgtgttaatgag |
31652395 |
T |
|
| Q |
301 |
cattccctttaaaataagatgaatttacaaacctatctgtctgtgatgattttcaggtgcttgtcctgtgatcaagggagataagtggttatgtgctaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31652396 |
cattccctttaaaataagatgaatttacaaacctatctgtctgtgatgattttcaggtgcttgtcctgtgatcaagggagataagtggttatgtgctaaa |
31652495 |
T |
|
| Q |
401 |
tg |
402 |
Q |
| |
|
|| |
|
|
| T |
31652496 |
tg |
31652497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 35 - 402
Target Start/End: Original strand, 31656934 - 31657301
Alignment:
| Q |
35 |
gtaattcgatgatacagttcagatgtcgaagaagggggtgagacggtgtttccaaatgccaagggaaattttagctctgtgccttggtggaatgagcttt |
134 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31656934 |
gtaattcgataatacagttcggatgttgaagaagggggtgagacggtgttcccaaatgccaagggaaattttagctctgtgccttggtggaatgagcttt |
31657033 |
T |
|
| Q |
135 |
ccgattgtggaaaaggaggactatcaattaagccaaagatgggtaatgctatacttttctggagcatgaagcctgatgcaactttagatccatcgagttt |
234 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31657034 |
ccgattgtggaaaaggaggactgtcaattaagccaaagatgggtaatgctatacttttctggagcatgaagcctgatgcaactttagatccatcgagttt |
31657133 |
T |
|
| Q |
235 |
gcacggtaaagtcttcttttattactatcaatcttaaaagcattaaagtgtgcttgtgttaatgagcattccctttaaaataagatgaatttacaaacct |
334 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
31657134 |
gcacggtaaattcttcttttattactatcaaacttaaaagcattaaagtgtgtttgtgttaacgagcattccctttaaaacaagatgaatttaaaaacct |
31657233 |
T |
|
| Q |
335 |
atctgtctgtgatgattttcaggtgcttgtcctgtgatcaagggagataagtggttatgtgctaaatg |
402 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||| |||||||||| ||| || ||||| |
|
|
| T |
31657234 |
atctgtatgtgataattttcaggtgcttgtcctgtgatcaagggcgataagtggtcatgcgccaaatg |
31657301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 46 - 394
Target Start/End: Original strand, 31630604 - 31630948
Alignment:
| Q |
46 |
atacagttcagatgtcgaagaagggggtgagacggtgtttccaaatgccaagggaaattttagctctgtgccttggtggaatgagctttccgattgtgga |
145 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31630604 |
atacagttcagatgttgaagaagggggtgagacagtgttcccagctgccaaggggaatattagctctgtgccttggtggaatgagctttcggattgtgga |
31630703 |
T |
|
| Q |
146 |
aaaggaggactatcaattaagccaaagatgggtaatgctatacttttctggagcatgaagcctgatgcaactttagatccatcgagtttgcacggtaa-- |
243 |
Q |
| |
|
||| |||||| ||||||||||||||||||||| |||| ||||||| |||||||||||||| |||| |||||||||||||||||||||||| ||| | |
|
|
| T |
31630704 |
aaaaaaggactttcaattaagccaaagatgggtgatgcattacttttttggagcatgaagccagatggaactttagatccatcgagtttgcatggttagt |
31630803 |
T |
|
| Q |
244 |
-agtcttcttttattactatcaatcttaaaagcattaaagtgtgcttgtgttaatgagcattccctttaaaataagatgaatttacaaacctatctgtct |
342 |
Q |
| |
|
||| | || |||||| | ||||||| | || ||| ||| |||||| ||||||| | | |||| ||| ||||| ||||||||||||||| || | |
|
|
| T |
31630804 |
tagt-tgctcttattatt----atcttaataacactaa--ggtgattgtgtcaatgagcttgcacttttaaagaagataaatttacaaacctatatgcat |
31630896 |
T |
|
| Q |
343 |
gtgatgattttcaggtgcttgtcctgtgatcaagggagataagtggttatgt |
394 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
31630897 |
gtgatacttttcaggtgcttgtcctgtgatcaagggtgataagtggtcatgt |
31630948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 31637883 - 31638112
Alignment:
| Q |
3 |
atatgaagttgatattggagttcacnnnnnnngtaattcgatgatacagttcagatgtcgaagaagggggtgagacggtgtttccaaatgccaagggaaa |
102 |
Q |
| |
|
|||||||||||||||||| || ||| ||| || ||||||||||||||||||| ||||||||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
31637883 |
atatgaagttgatattggtgtgcacacttcttgtattttgatgatacagttcagatgttgaagaagggggtgagacagtgtttccatctgctaagggaaa |
31637982 |
T |
|
| Q |
103 |
ttttagctctgtgccttggtggaatgagctttccgattgtggaaaaggaggactatcaattaagccaaagatgggtaatgctatacttttctggagcatg |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31637983 |
ttttagctctgtgccttggtggaatgagctttctgattgtggaaaaaagggactttcaattaagccaaagatgggtaatgctatacttttctggggcatg |
31638082 |
T |
|
| Q |
203 |
aagcctgatgcaactttagatccatcgagt |
232 |
Q |
| |
|
|||||||||||||| ||||||||| |||| |
|
|
| T |
31638083 |
aagcctgatgcaaccgtagatccattgagt |
31638112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 42 - 226
Target Start/End: Original strand, 31646626 - 31646810
Alignment:
| Q |
42 |
gatgatacagttcagatgtcgaagaagggggtgagacggtgtttccaaatgccaagggaaattttagctctgtgccttggtggaatgagctttccgattg |
141 |
Q |
| |
|
||||||||| |||| |||| ||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31646626 |
gatgatacaattcaaatgttgaagaagggggtgagacagtgtttccatttgctgagggaaattttagctctgtgccttggtggaatgagctttcggattg |
31646725 |
T |
|
| Q |
142 |
tggaaaaggaggactatcaattaagccaaagatgggtaatgctatacttttctggagcatgaagcctgatgcaactttagatcca |
226 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||| |||| ||||||||||||| |||||||| |||| ||||||||||||| |
|
|
| T |
31646726 |
tggaaaaaaaggactttcaattaagccaaagatgggtgatgcattacttttctggagtatgaagccagatggaactttagatcca |
31646810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 394
Target Start/End: Original strand, 31646934 - 31646982
Alignment:
| Q |
346 |
atgattttcaggtgcttgtcctgtgatcaagggagataagtggttatgt |
394 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| ||||| |||| |||| |
|
|
| T |
31646934 |
atgattttcaggtgcttgtccagtgattaagggtgataaatggtcatgt |
31646982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 43 - 237
Target Start/End: Complemental strand, 9104929 - 9104735
Alignment:
| Q |
43 |
atgatacagttcagatgtcgaagaagggggtgagacggtgtttccaaatgccaagggaaattttagctctgtgccttggtggaatgagctttccgattgt |
142 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||| ||||| || ||| ||||| ||||| || |||||| |||| ||||||||||| |||||| |
|
|
| T |
9104929 |
atgatacagtacagatgttgaagaagggggtgagacagtgttccctgctgctaaggggaatttcagtaatgtgccgtggtataatgagctttctgattgt |
9104830 |
T |
|
| Q |
143 |
ggaaaaggaggactatcaattaagccaaagatgggtaatgctatacttttctggagcatgaagcctgatgcaactttagatccatcgagtttgca |
237 |
Q |
| |
|
|| ||| |||||| |||||||||||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||| |||| || ||||| |
|
|
| T |
9104829 |
gggaaaaaaggactttcaattaagccaaagagaggtgatgctttacttttctggagcatgaagccggatgcaactttagatgcatcaagcttgca |
9104735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University