View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1546_high_3 (Length: 355)
Name: NF1546_high_3
Description: NF1546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1546_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 34661038 - 34660693
Alignment:
| Q |
1 |
ttgtcaaaaagcaaactcctcactattatcaatatttttcatctctcttgttctcatatctcttggatcaggtggtattagaccttgtgttgtgccattt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34661038 |
ttgtcaaaaagcaaactcctcacaattatcaatatttttcatctctcttgttctcatatctcttggatcaggtggtattagaccttgtgttgtgccattt |
34660939 |
T |
|
| Q |
101 |
ttaggagaacaatttgatatgtcnnnnnnnggtgtagcatcaagaaaatggaacattttcaattggtattttttcttcatgggtatagcttctttaagtg |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34660938 |
ttaggagaacaatttgatatgtcaaaaaaaggtgtagcatcaagaaaatggaacattttcaattggtattttttcttcatgggtatagcttctttaagtg |
34660839 |
T |
|
| Q |
201 |
ctttgaccattgttgtttacattcaagacaatactggttggggttggggatttggcataccaacaattgtcatgttattgtccattgtggcctttgtgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34660838 |
ctttgaccattgttgtttacattcaagacaatactggttggggttggggatttggcataccaacaattgtcatgttattgtccattgtggcctttgtgtt |
34660739 |
T |
|
| Q |
301 |
tggttcaccattctataggactgagaaacctaaagggagccctatg |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34660738 |
tggttcaccattctataggactgagaaacctaaagggagccctatg |
34660693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 51 - 249
Target Start/End: Complemental strand, 34666294 - 34666096
Alignment:
| Q |
51 |
ttctcatatctcttggatcaggtggtattagaccttgtgttgtgccatttttaggagaacaatttgatatgtcnnnnnnnggtgtagcatcaagaaaatg |
150 |
Q |
| |
|
|||||| |||||||||||||||||| |||||| | ||||||||||| |||| |||||| |||||||| ||| | ||||| | ||| |||||||| |
|
|
| T |
34666294 |
ttctcacatctcttggatcaggtggcattagatcatgtgttgtgcctttttcaggagatcaatttgacatgaccaaaaaaggtgttgaatctagaaaatg |
34666195 |
T |
|
| Q |
151 |
gaacattttcaattggtattttttcttcatgggtatagcttctttaagtgctttgaccattgttgtttacattcaagacaatactggttggggttgggg |
249 |
Q |
| |
|
|||| | ||||||||||| ||||| | |||||| | ||||| |||||||||||||||||||| |||||||||||||| ||| || ||||||||||| |
|
|
| T |
34666194 |
gaacctcttcaattggtactttttttgcatgggatttgcttcattaagtgctttgaccattgtggtttacattcaagatcatatgggatggggttgggg |
34666096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 53 - 269
Target Start/End: Complemental strand, 34646533 - 34646317
Alignment:
| Q |
53 |
ctcatatctcttggatcaggtggtattagaccttgtgttgtgccatttttaggagaacaatttgatatgtcnnnnnnnggtgtagcatcaagaaaatgga |
152 |
Q |
| |
|
|||| ||||||||||||||| || ||||||||||||||||| || |||| | ||| ||||| || ||| | |||||||| || || ||||||| |
|
|
| T |
34646533 |
ctcacatctcttggatcaggcggcattagaccttgtgttgtacctttttcggcagaccaattcgacatgacaaaagaaggtgtagcttctaggaaatgga |
34646434 |
T |
|
| Q |
153 |
acattttcaattggtattttttcttcatgggtatagcttctttaagtgctttgaccattgttgtttacattcaagacaatactggttggggttggggatt |
252 |
Q |
| |
|
|| | ||||||||||| |||||| |||||||| | |||||| |||||||||| |||||||| ||||| ||||||||||| ||||||||||||||| | |
|
|
| T |
34646433 |
acctcttcaattggtactttttcatcatgggttttgcttctctaagtgctttaaccattgtggtttatgttcaagacaatgtgggttggggttggggact |
34646334 |
T |
|
| Q |
253 |
tggcataccaacaattg |
269 |
Q |
| |
|
||| || ||||| |||| |
|
|
| T |
34646333 |
tgggattccaaccattg |
34646317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University