View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1546_low_1 (Length: 432)
Name: NF1546_low_1
Description: NF1546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1546_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 27482482 - 27482880
Alignment:
| Q |
18 |
catatgagcagttccgtagataagataaccaccttttttcatagggaaacttgctttctgaacatggacagggtcactactattgtttccaggaataaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| |
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| T |
27482482 |
catatgagcagttccgtagataagataaccacctttttctatagggaaacttgctttctgaacatggacatggtcactgctattgtttcctggaataaaa |
27482581 |
T |
|
| Q |
118 |
tactctgtctgtagcaaattaagaaatatttgttaatcactttctatgaatgtgccaaatgatttaaacctactatcatgagtgttagttagaagtgaat |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| || | |||||||||||| |||||||||| |||||||| ||||||| |
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| T |
27482582 |
tactctgtctgtggcaaattaagaaatatttgttaatcactttctatgaaggttcaaaatgatttaaaactactatcataagtgttag----aagtgaac |
27482677 |
T |
|
| Q |
218 |
ttatttttctttttgcatgcaaatgtgaatactatttgttactatatttcatgctagaaggtagagtttccttaaaagactttttaatatttccaaattc |
317 |
Q |
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|| ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27482678 |
tttttttt-tttttgcatgcaaatgtgaatactatctgttactatatttcatgttagaaggtagagtttccttaaaagaccttttaatatttccaaattc |
27482776 |
T |
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| Q |
318 |
agttgttcataaaattgaaaattgaatttaaataatttttaccagacaatcatgtattgttttagaaccatctgttttgacacgatcagtggaatccatc |
417 |
Q |
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| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27482777 |
aattgttcataaaattgaaaattgaatttaaataacttttaccagacaatcatgtattgttttagaaccatttgttttgacacgatcagtggaatccatc |
27482876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 27489682 - 27489977
Alignment:
| Q |
18 |
catatgagcagttccgtagataagataaccaccttttttcatagggaaacttgctttctgaacatggacagggtcactactattgtttccaggaataaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
27489682 |
catatgagcagttccgtagataagataaccacctttttccatagggaaacttgctttctgaacatggatagggtcactactattgtttccaggaataata |
27489781 |
T |
|
| Q |
118 |
tactctgtctgtagcaaattaagaaatatttgttaatcactttctatgaatgtgccaaatgatttaaacctactatcatgagtgttagttagaagtgaat |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||| ||||||||| || ||||||||||||| |
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| T |
27489782 |
tactctgtctgtagcaaattaagaaatatttgttaatcactttctatgaaggttcaaaatgatttaaaattactatcatacgt----gttagaagtgaat |
27489877 |
T |
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| Q |
218 |
ttatttttctttttgcatgcaaatgtgaatactatttgttactatatttcatgctagaaggtagagtttccttaaaagactttttaatatttccaaattc |
317 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
27489878 |
ttatttttc-ttttgcatgcaaatgtgaatactatttgttactatatttcatgttagaaggtagagttttcttaaaagaccttttaatatttccaaattc |
27489976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 315 - 421
Target Start/End: Original strand, 27490010 - 27490116
Alignment:
| Q |
315 |
ttcagttgttcataaaattgaaaattgaatttaaataatttttaccagacaatcatgtattgttttagaaccatctgttttgacacgatcagtggaatcc |
414 |
Q |
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|||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
27490010 |
ttcaattgttcataaaattgaaaattgaatttaagtaacttttaccagacaatcatgtattgttttagaaccatttgttttggcacgatcagtggaatcc |
27490109 |
T |
|
| Q |
415 |
atcacat |
421 |
Q |
| |
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||||||| |
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| T |
27490110 |
atcacat |
27490116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 98 - 290
Target Start/End: Original strand, 27492776 - 27492959
Alignment:
| Q |
98 |
tattgtttccaggaataaaatactctgtctgtagcaaattaagaaatatttgttaatcactttctatgaatgtgccaaatgatttaaacctactatcatg |
197 |
Q |
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||||||| ||||||||||||||| |||| ||| |||||||| |||||||| | ||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
27492776 |
tattgttctcaggaataaaatactttgtcggtaacaaattaataaatatttatcaatcactttctatgaatgtgcaaaatgatttaaaactactatcatg |
27492875 |
T |
|
| Q |
198 |
agtgttagttagaagtgaatttatttttctttttgcatgcaaatgtgaatactatttgttactatatttcatgctagaaggtagagtttcctt |
290 |
Q |
| |
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| | |||||||||||| || |||||||| |||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||| |
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| T |
27492876 |
aat----gttagaagtgaactt-tttttctt----catgcaaatgtgaatattatttgttactatatttcattttagaaagtatagtttcctt |
27492959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 371
Target Start/End: Original strand, 27493018 - 27493077
Alignment:
| Q |
313 |
aattcagttgttcataaaattgaaaattgaatttaaataa-tttttaccagacaatcatg |
371 |
Q |
| |
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|||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||| |
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| T |
27493018 |
aattcagttgatcataaaattgcaaatttaatttaaataactttttaccagacaatcatg |
27493077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 12599652 - 12599706
Alignment:
| Q |
32 |
cgtagataagataaccaccttttttcatagggaaacttgctttctgaacatggac |
86 |
Q |
| |
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|||||||||||||||||||||| | |||||||| |||||||| ||||| ||||| |
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| T |
12599652 |
cgtagataagataaccacctttctccatagggatgcttgctttttgaacgtggac |
12599706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 2308982 - 2308707
Alignment:
| Q |
18 |
catatgagcagttccgtagata--agataaccacc------ttttttcatagggaaacttgctttctgaacatggacagggtcactactattgtttccag |
109 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||||| ||||||| ||||||||||| |||||||||||| |
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| T |
2308982 |
catatgagcagttccgtagatataagataaccaccattttttttttttatagggattcttgctttttgaacattgacagggtcaccactattgtttcctt |
2308883 |
T |
|
| Q |
110 |
gaataaaatactctgtctgtagcaaattaagaaatatttgttaatcactttctatgaatgtgccaaatgatttaaacctactatcatgagtgttagttag |
209 |
Q |
| |
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||||| ||| |||| ||||| |||||||| |||| ||||||||||||||||||||||| ||| |||||||||||| | || || | || |||| |
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| T |
2308882 |
gaatagtatagtctgcctgtaacaaattaaaaaatctttgttaatcactttctatgaatttgcaaaatgatttaaaaatgtta--attaacgt--gttat |
2308787 |
T |
|
| Q |
210 |
aagtgaatttatttttctttttgcatgcaaatgtgaatactatttgttactatatttcatgctagaaggtagagtttcctt |
290 |
Q |
| |
|
||||||| ||||||||| |||||| |||||||| ||||| ||||||||||||||||||||| || || ||||||||||||| |
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|
| T |
2308786 |
aagtgaacttatttttc-ttttgcttgcaaatgagaatattatttgttactatatttcatgttataaagtagagtttcctt |
2308707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 2308648 - 2308550
Alignment:
| Q |
313 |
aattcagttgttcataaaattgaaaattgaatttaaataatttttaccagacaatcatgtattgttttagaaccatctgttttgacacgatcagtggaat |
412 |
Q |
| |
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|||| ||||| | ||||||||||||||| || ||| || | |||||||||||||||||| ||||| | | |||||| ||||||| | |||||||||||| |
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| T |
2308648 |
aatttagttgatgataaaattgaaaatttaagttatatgaattttaccagacaatcatggattgtgtcaaaaccatttgttttg--aagatcagtggaat |
2308551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 12017763 - 12017710
Alignment:
| Q |
32 |
cgtagataagataaccaccttttttcatagggaaacttgctttctgaacatgga |
85 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| |||||||| ||||| |||| |
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|
| T |
12017763 |
cgtagataagataaccacctttcttcattgggatgcttgctttttgaacgtgga |
12017710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 14623862 - 14623915
Alignment:
| Q |
32 |
cgtagataagataaccaccttttttcatagggaaacttgctttctgaacatgga |
85 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||| ||||| |||| |
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| T |
14623862 |
cgtagataagataaccacctttcttcatagggatgcttgctttttgaacgtgga |
14623915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 34124062 - 34124115
Alignment:
| Q |
32 |
cgtagataagataaccaccttttttcatagggaaacttgctttctgaacatgga |
85 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||| ||||| |||| |
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|
| T |
34124062 |
cgtagataagataaccacctttcttcatagggatgcttgctttttgaacgtgga |
34124115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 34211319 - 34211371
Alignment:
| Q |
32 |
cgtagataagataaccaccttttttcatagggaaacttgctttctgaacatgga |
85 |
Q |
| |
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||||||||||||| |||||||||||||||||| |||||||| |||||||||| |
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| T |
34211319 |
cgtagataagatagccaccttttttcataggg-tgcttgctttttgaacatgga |
34211371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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