View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1546_low_10 (Length: 261)
Name: NF1546_low_10
Description: NF1546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1546_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 32191408 - 32191648
Alignment:
| Q |
1 |
gagatatatgctgatgtgagacttatttttaagaatgcaatggaataaaatgatg------------tcttgaccatatgatggctcaagacnnnnnnng |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
32191408 |
gagatatatgctgatgtgagacttatttttaagaatgcaatggaataaaatgatgaaaagaatgatgtcttgaccatatgatggctcaagactttttttg |
32191507 |
T |
|
| Q |
89 |
gaaaaatttgagaataaatagctgcatcttctgcctaaagttgttaaggcgatattttttgttttcccaaattattttcctttcttttggataaaattga |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32191508 |
gaaaaatttgagaataaatagctgcatcttctgcctaaagttgtta-ggcgatattttttgttttcccaaattattttcctttcttttggataaaattga |
32191606 |
T |
|
| Q |
189 |
tttcagtcatcgtatgcaatatttttctgtagctacattgac |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32191607 |
tttcagtcatcgtatgcaatatttttctgtagctacattgac |
32191648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 230
Target Start/End: Complemental strand, 32192015 - 32191877
Alignment:
| Q |
90 |
aaaaatttgagaataaatagctgcatcttctgcctaaagttgttaaggcgatattttttgttttcccaaattattttcctttcttttggataaaattgat |
189 |
Q |
| |
|
|||||||||||||||||| ||||| ||| | |||| ||||| ||||||| | |||| ||||||||| |||||||||||| |||||||||| |||||| |
|
|
| T |
32192015 |
aaaaatttgagaataaatgactgcaccttttacctacagttgctaaggcggttattttgtttttcccaagttattttcctttattttggataacattgat |
32191916 |
T |
|
| Q |
190 |
ttcagtcatcgtatgcaatatttttctgtagctacattgac |
230 |
Q |
| |
|
||| || || |||| || ||||||||| |||||||||||| |
|
|
| T |
32191915 |
ttcggt--tcctatgaaacatttttctggagctacattgac |
32191877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 14998150 - 14998242
Alignment:
| Q |
88 |
ggaaaaatttgagaataaatagctgcatcttctgcctaaagttgttaaggcgatattttttgttttcccaaattattttcctttcttttggat |
180 |
Q |
| |
|
||||||| ||||||| |||| |||||||||| |||||||||||| ||||||| || ||| |||||| ||| || ||||||||||||||||| |
|
|
| T |
14998150 |
ggaaaaagttgagaagaaatggctgcatcttttgcctaaagttgctaaggcggtaatttgtgtttttggaaaatactttcctttcttttggat |
14998242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 14998299 - 14998337
Alignment:
| Q |
189 |
tttcagtcatcgtatgcaatatttttctgtagctacatt |
227 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
14998299 |
tttcagccatcctatgcaatatttttctgtagctacatt |
14998337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29466879 - 29466933
Alignment:
| Q |
1 |
gagatatatgctgatgtgagacttatttttaagaatgcaatggaataaaatgatg |
55 |
Q |
| |
|
||||||||||||||||| || || |||||||||||||||||| | || ||||||| |
|
|
| T |
29466879 |
gagatatatgctgatgtaaggctgatttttaagaatgcaatgaagtacaatgatg |
29466933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University