View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1546_low_4 (Length: 363)

Name: NF1546_low_4
Description: NF1546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1546_low_4
NF1546_low_4
[»] chr8 (1 HSPs)
chr8 (10-348)||(29157345-29157683)
[»] chr2 (8 HSPs)
chr2 (114-231)||(2583668-2583785)
chr2 (58-187)||(2596498-2596628)
chr2 (272-348)||(2581615-2581691)
chr2 (272-348)||(2596304-2596380)
chr2 (207-276)||(2596431-2596500)
chr2 (168-229)||(2584987-2585051)
chr2 (299-348)||(2589229-2589278)
chr2 (222-276)||(2581743-2581797)
[»] chr7 (1 HSPs)
chr7 (58-240)||(46769773-46769964)
[»] chr6 (1 HSPs)
chr6 (296-348)||(30399420-30399472)


Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 348
Target Start/End: Complemental strand, 29157683 - 29157345
Alignment:
Q  10 agaagaataggctttccatagacatatacccatgacatgacacaaaccacaattacataaaagaaacaaggaaaaactgaaagttgaatggttgaattgg 109  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29157683 agaagaataggctttccatagacatatacccatgacatgaaacaaaccacaattacataaaagaaacaaggaaaaactgaaagttgaatggttgaattgg 29157584  T
Q  110 atgaaaaattagaagagagatggcatgtaaagaaatgaataaggaaaaggactaaaatgcataaatgtattagtgacattcacatggttccaaacaaaca 209  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29157583 atgaaaaattaaaagagagatggcatgtaaagaaatgaataaggaaaaggactaaaatgcataaatgtattagtgacattcacatggttccaaacaaaca 29157484  T
Q  210 gaagagttataaaacaaaacaattattaaattgtgagttgcttccaatgtccccgaaaaaacctaaagctattgcagcaccaaaagcctcctttcttcct 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| |||||||||    
T  29157483 gaagagttataaaacaaaacaattattaaattgtgagttgcttccaatgtccccgaagaaacctaaagctattgcagcaccaaaaagctcatttcttcct 29157384  T
Q  310 ttcctccaaccatcccacaaatgtcttgacgtgctttct 348  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  29157383 ttcctccaatcatcccacaaatgtcttgacgtgctttct 29157345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 114 - 231
Target Start/End: Complemental strand, 2583785 - 2583668
Alignment:
Q  114 aaaattagaagagagatggcatgtaaagaaatgaataaggaaaaggactaaaatgcataaatgtattagtgacattcacatggttccaaacaaacagaag 213  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  2583785 aaaattaaaagagagatggcatgtaaataaatgaataaggaaaaggactaaaatgcataaatgtattagtgacattcacatgtttccaaacaaagagaag 2583686  T
Q  214 agttataaaacaaaacaa 231  Q
    ||||| ||||||||||||    
T  2583685 agttacaaaacaaaacaa 2583668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 58 - 187
Target Start/End: Complemental strand, 2596628 - 2596498
Alignment:
Q  58 acaattacat-aaaagaaacaaggaaaaactgaaagttgaatggttgaattggatgaaaaattagaagagagatggcatgtaaagaaatgaataaggaaa 156  Q
    |||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| ||||||| |||||||    
T  2596628 acaattacattaaaagaaacatggaaaaactgaaagtcgaatggttgaattggatgaaaaattaaaagagagatagaatgtaaaaaaatgaacaaggaaa 2596529  T
Q  157 aggactaaaatgcataaatgtattagtgaca 187  Q
    |||| | ||| ||||||||||||||||||||    
T  2596528 aggatttaaaggcataaatgtattagtgaca 2596498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 272 - 348
Target Start/End: Complemental strand, 2581691 - 2581615
Alignment:
Q  272 ctaaagctattgcagcaccaaaagcctcctttcttcctttcctccaaccatcccacaaatgtcttgacgtgctttct 348  Q
    |||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2581691 ctaaagctattgtagcaccaaaaagctcctttcttcctttcctccaaccatcccacaaatgtcttgacgtgctttct 2581615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 272 - 348
Target Start/End: Complemental strand, 2596380 - 2596304
Alignment:
Q  272 ctaaagctattgcagcaccaaaagcctcctttcttcctttcctccaaccatcccacaaatgtcttgacgtgctttct 348  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2596380 ctaaagctattgtagcaccaaaaagctcctttcttcctttcctccaaccatcccataaatgtcttgacgtgctttct 2596304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 2596500 - 2596431
Alignment:
Q  207 acagaagagttataaaacaaaacaattattaaattgtgagttgcttccaatgtccccgaaaaaacctaaa 276  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||  |||| |||||||||    
T  2596500 acagaagagttataaaacaaaacaattattacattgtgagttgcttcaaatgtcttcgaagaaacctaaa 2596431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 2585051 - 2584987
Alignment:
Q  168 gcataaatgtattagtgacattcacatggttccaaacaaacag---aagagttataaaacaaaac 229  Q
    ||||||||| |||||||||||| ||||| ||||||||||||||   |||||||||||||||||||    
T  2585051 gcataaatgaattagtgacatttacatgtttccaaacaaacagaagaagagttataaaacaaaac 2584987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 2589278 - 2589229
Alignment:
Q  299 cctttcttcctttcctccaaccatcccacaaatgtcttgacgtgctttct 348  Q
    ||||||||  ||||||| ||||||||||||||||||||||||||||||||    
T  2589278 cctttctttttttcctctaaccatcccacaaatgtcttgacgtgctttct 2589229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 2581797 - 2581743
Alignment:
Q  222 aacaaaacaattattaaattgtgagttgcttccaatgtccccgaaaaaacctaaa 276  Q
    ||||||| |||||||||||||||||||||||| ||||||  |||| |||||||||    
T  2581797 aacaaaaaaattattaaattgtgagttgcttcaaatgtcttcgaagaaacctaaa 2581743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 58 - 240
Target Start/End: Complemental strand, 46769964 - 46769773
Alignment:
Q  58 acaattacataaaagaaacaaggaaaaactgaaa-gttgaatggttgaattggatgaaaaattaga-----agagagatggcatgtaaagaaatgaataa 151  Q
    ||||||||||  |||||| ||||||||||||||| |||||||| |||||||||||| ||||||| |     | ||||||| ||| |||||||||||||||    
T  46769964 acaattacattgaagaaagaaggaaaaactgaaaagttgaatgattgaattggatgtaaaattaaattaaaatagagatgacatataaagaaatgaataa 46769865  T
Q  152 ggaaaaggactaaaatgcataaatgtattagtgacattcacatggttccaaacaaacag---aagagttataaaacaaaacaattattaaat 240  Q
    ||| | ||||||||| ||||||||||| ||||||||| |||||| ||||||||||||||   |||||||||||||||||| |||||||||||    
T  46769864 ggatatggactaaaaggcataaatgtactagtgacatccacatgcttccaaacaaacagaagaagagttataaaacaaaataattattaaat 46769773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 30399472 - 30399420
Alignment:
Q  296 cctcctttcttcctttcctccaaccatcccacaaatgtcttgacgtgctttct 348  Q
    ||||| ||||||||||| || ||||| | ||||||||||||||||||||||||    
T  30399472 cctccattcttcctttcatctaaccagcgcacaaatgtcttgacgtgctttct 30399420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University