View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1546_low_6 (Length: 346)
Name: NF1546_low_6
Description: NF1546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1546_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 6375128 - 6374954
Alignment:
| Q |
14 |
aggaaacacaagaagaagattgtcaagaacatggtgaactcacgacctttttcggttatgcttccaaagggttttgttcctccttctggttcctcgcctt |
113 |
Q |
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| T |
6375128 |
aggaaacacaagaagaagattgtcaagaacatggtgaactcacgacctttttcggttatgcttccaaagggttttgttcctccttctggttcctcgcctt |
6375029 |
T |
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| Q |
114 |
gtcacaatgatcaacccaattcagtgtcttttcactgttatctcacttcaacagaaccttgaggaataaggtgtc |
188 |
Q |
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| T |
6375028 |
gtcacaatgatcaacccaattcagtgtcttttcactgttatctcacttcaacagaaccttgaggaataaggtgtc |
6374954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 207 - 335
Target Start/End: Complemental strand, 6374924 - 6374796
Alignment:
| Q |
207 |
gtatttaagcaatttacagtgaaagatgagcaaagaaagttttccaaatttggttattgcttgtgtcttaatccttcttgcattaattgtagtgtatcac |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6374924 |
gtatttaagcaatttacagtgaaagatgagcaaagaaagttttccaaatttggttattgcttgtgtcttaatccttcttgcattaattgtagtgtatcac |
6374825 |
T |
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| Q |
307 |
ttccttgatgacactattgttttcccttt |
335 |
Q |
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| T |
6374824 |
ttccttgatgacactattgttttcccttt |
6374796 |
T |
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