View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15470_high_1 (Length: 310)
Name: NF15470_high_1
Description: NF15470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15470_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 16908434 - 16908738
Alignment:
| Q |
1 |
ccacctcccatcaataaacctattgcctttcctatatcctccctcttcaccacatcatccccaaactcattccaatttctccattcttttgcaccaactg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16908434 |
ccacctcccatcaataaacctattgcctttcctatatcctccctcttcaccacatcatccccaaactcattccaatttctccattcttttgctccaactg |
16908533 |
T |
|
| Q |
101 |
ccacaccaatcttgaacacatcaaccaacaatctctcattgaaaaactgttcagcaaataatggccaagtagccaatggtaaacctgcatttacactttc |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
16908534 |
ccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagtagccaatggtaaacctgcatttacactttc |
16908633 |
T |
|
| Q |
201 |
cataatagtgttccacccacaatgagtcaccacagctccaactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatagcctttg |
300 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16908634 |
cataatagtgttccacccacaatgagtcacaacagctccaactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatagcctttg |
16908733 |
T |
|
| Q |
301 |
cttct |
305 |
Q |
| |
|
|||| |
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|
| T |
16908734 |
tttct |
16908738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 14870225 - 14869926
Alignment:
| Q |
1 |
ccacctcccatcaataaacctattgcctttcctatatcctccctcttcaccacatcatccccaaactcattccaatttctccattcttttgcaccaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |
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| T |
14870225 |
ccacctcccatcaataaacctattgcctttcctatctcatccctcttaaccacatcatccccaaactcattccagtttctccattcctttgctccaactg |
14870126 |
T |
|
| Q |
101 |
ccacaccaatcttgaacacatcaaccaacaatctctcattgaaaaactgttcagcaaataatggccaagtagccaatggtaaacctgcatttacactttc |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| |
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|
| T |
14870125 |
ccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagttgccaatgacaaacctgcatttacactttc |
14870026 |
T |
|
| Q |
201 |
cataatagtgttccacccacaatgagtcaccacagctccaactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatagcctttg |
300 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| |||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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|
| T |
14870025 |
cataatagtgttccagccacagtgagtcaccactgctccaactgcagcatgctctagtatcagcagttgtggtgcccaaccccatatcaaatagcctttg |
14869926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 299
Target Start/End: Original strand, 5994714 - 5994979
Alignment:
| Q |
34 |
atatcctccctcttcaccacatcatccccaaactcattccaatttctccattcttttgcaccaactgccacaccaatcttgaacacatcaaccaacaatc |
133 |
Q |
| |
|
||||| ||||| ||||| || ||| |||||||||||||||||| ||||||||||| || || || | |||||||| || ||||||||||| | | | |
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|
| T |
5994714 |
atatcttcccttttcacaacctcactcccaaactcattccaattcctccattctttagctcccacaggaacaccaattttcaacacatcaactacaagtt |
5994813 |
T |
|
| Q |
134 |
tctcattgaaaaactgttcagcaaataatggccaagtagccaatggtaaacctgcatttacactttccataatagtgttccacccacaatgagtcaccac |
233 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| || | |||||| || |||| |||||||| | || ||||||||| ||||||||| |||| | |
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|
| T |
5994814 |
tctcattgaaaaaatgttcagcaaataaaggccatgtcactgttggtaacccaacattcacactttcaacaacagtgttccaaccacaatgactcactaa |
5994913 |
T |
|
| Q |
234 |
agctccaactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatagccttt |
299 |
Q |
| |
|
|||||| |||| || ||| ||||||| ||||||||||||||| ||||| |||||||||||||| |
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|
| T |
5994914 |
ccctccaattgcatgattctcaagtatcaaaagctgtggtgcccatccccaaatcaaatagccttt |
5994979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 170
Target Start/End: Original strand, 17572316 - 17572461
Alignment:
| Q |
25 |
gcctttcctatatcctccctcttcaccacatcatccccaaactcattccaatttctccattcttttgcaccaactgccacaccaatcttgaacacatcaa |
124 |
Q |
| |
|
|||||||| || || ||||| ||||| || ||| |||||||||||||||||||||||||||||| || ||||| | || ||||| | |||||||||| |
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|
| T |
17572316 |
gcctttccaatttcttcccttttcacaacctcactcccaaactcattccaatttctccattctttggccccaacagataccccaattctcaacacatcaa |
17572415 |
T |
|
| Q |
125 |
ccaacaatctctcattgaaaaactgttcagcaaataatggccaagt |
170 |
Q |
| |
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| | ||| ||||||| ||||| ||||||||||| || |||||||| |
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|
| T |
17572416 |
caaccaacttctcattaaaaaaatgttcagcaaacaaaggccaagt |
17572461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 17620367 - 17620329
Alignment:
| Q |
60 |
cccaaactcattccaatttctccattcttttgcaccaac |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
17620367 |
cccaaactcattccaatttctccattctttagccccaac |
17620329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 168
Target Start/End: Original strand, 14709913 - 14710056
Alignment:
| Q |
25 |
gcctttcctatatcctccctcttcaccacatcatccccaaactcattccaatttctccattcttttgcaccaactgccacaccaatcttgaacacatcaa |
124 |
Q |
| |
|
|||||||| || || ||||| ||||| || ||| |||||||||||||||||||||||||||||| || ||||| | ||| ||||| | |||||||||| |
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| T |
14709913 |
gcctttccaatttcttcccttttcacaacctcactcccaaactcattccaatttctccattctttagccccaacagacaccccaattctcaacacatcaa |
14710012 |
T |
|
| Q |
125 |
ccaacaatc-tctcattgaaaaactgttcagcaaataatggccaa |
168 |
Q |
| |
|
|| |||| ||||||| ||||| || |||||||| || |||||| |
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|
| T |
14710013 |
-taataatcttctcattaaaaaattgatcagcaaacaaaggccaa |
14710056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 170
Target Start/End: Complemental strand, 12613877 - 12613769
Alignment:
| Q |
62 |
caaactcattccaatttctccattcttttgcaccaactgccacaccaatcttgaacacatcaaccaacaatctctcattgaaaaactgttcagcaaataa |
161 |
Q |
| |
|
||||||||||||||||| |||||||| | || | || ||| ||||| || ||||| ||||||| |||| |||||| ||||| |||||||||||||| |
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|
| T |
12613877 |
caaactcattccaatttttccattctctaatccctagtgacaccccaatttttaacacttcaaccaccaatttctcatgaaaaaattgttcagcaaataa |
12613778 |
T |
|
| Q |
162 |
tggccaagt |
170 |
Q |
| |
|
|||||||| |
|
|
| T |
12613777 |
aggccaagt |
12613769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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