View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15470_low_1 (Length: 359)

Name: NF15470_low_1
Description: NF15470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15470_low_1
NF15470_low_1
[»] chr5 (9 HSPs)
chr5 (19-351)||(17383486-17383818)
chr5 (27-336)||(17377124-17377438)
chr5 (24-124)||(17392280-17392381)
chr5 (283-350)||(17392453-17392520)
chr5 (193-319)||(19806841-19806967)
chr5 (238-319)||(20111938-20112019)
chr5 (239-319)||(19653900-19653980)
chr5 (257-319)||(13712176-13712238)
chr5 (259-319)||(1347935-1347995)
[»] chr1 (2 HSPs)
chr1 (79-333)||(26052955-26053204)
chr1 (23-69)||(26053532-26053578)
[»] scaffold0009 (2 HSPs)
scaffold0009 (257-321)||(40602-40666)
scaffold0009 (265-321)||(33992-34048)
[»] chr2 (1 HSPs)
chr2 (257-300)||(15784656-15784699)
[»] chr3 (4 HSPs)
chr3 (257-319)||(24912861-24912923)
chr3 (238-319)||(24890924-24891005)
chr3 (257-318)||(32226559-32226620)
chr3 (238-318)||(32242030-32242110)


Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 17383486 - 17383818
Alignment:
Q  19 atatgggtatgatatatgataatgatgcatcttcttttataatcaatattaagttatgtgatgtttgattatctgtatttataaaatgtatgtattttct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17383486 atatgggtatgatatatgataatgatgcatcttcttttataatcaatattaagttatgtgatgtttgattatctgtatttataagatgtatgtattttct 17383585  T
Q  119 tttttgtcttgtgcctgtgcagatagcacgaagtctttccaataaacaaatcaatacatttgagaaaagccttcccgtgcttgaaaacttaagggaactt 218  Q
    ||||||| |||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17383586 tttttgtgttgtgcctgtgcagatagaacaaaatctttccaataaacaaatcaatacatttgagaaaagccttcccgtgcttgaaaacttaagggaactt 17383685  T
Q  219 caactaacttggttcgaacgcattcataactgggaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattctaaaggtttgtt 318  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17383686 caactaacttggttcggacgcattcataactgggaggtggtagtgaaaatgctacagaattgtcccatacttcaaactcttaccattctaaaggtttgtt 17383785  T
Q  319 tattatagttactaatttttacaggttcttctc 351  Q
    |||||||||||||||||||||||||||||||||    
T  17383786 tattatagttactaatttttacaggttcttctc 17383818  T

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Target: chr5; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 27 - 336
Target Start/End: Original strand, 17377124 - 17377438
Alignment:
Q  27 atgatatatgataatgatgcatcttcttttataatcaatattaagttatgtgatgtttgat-tatctgtatttataaaatgtatgtattttcttttttgt 125  Q
    ||||| ||||||||||||||||||||||| |||||||||||||  |  | | ||||| | | ||||||||| ||||| ||||||||||||||||||||||    
T  17377124 atgatctatgataatgatgcatcttcttt-ataatcaatattatatattat-atgttaggtatatctgtatgtataagatgtatgtattttcttttttgt 17377221  T
Q  126 cttgtgcctgtgcagatagcacgaagtctttccaataaacaaatcaatacatttgagaaaagccttcccgtgcttgaaaacttaagggaacttcaactaa 225  Q
     ||||| |||||||||||| ||||||||||||| ||||| |||||||| ||||||| |||||||||||| || |||||||| |||    ||||||||||     
T  17377222 gttgtgtctgtgcagatagaacgaagtctttccgataaagaaatcaattcatttgacaaaagccttcccatgtttgaaaacataaccagacttcaactat 17377321  T
Q  226 cttggt-tcgaac-----gcattcataactgggaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattctaaaggtttgttt 319  Q
    |||||| || ||      || ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17377322 cttggtctccaagcattagcgttcatgactgggaggtggtattgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgttt 17377421  T
Q  320 attatagttactaattt 336  Q
    |||||||||||||||||    
T  17377422 attatagttactaattt 17377438  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 17392280 - 17392381
Alignment:
Q  24 ggtatgatatatgataatgatgcatcttcttttataatcaatattaagt--tatgtgatgtttgattatctgtatttataaaatgtatgtattttctttt 121  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||  |  |||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  17392280 ggtatgatagatgataatgatgcatcttattttataatcaatattatattatatgtgatgtttga-tatctgtatttataagatgtatgtattttctttt 17392378  T
Q  122 ttg 124  Q
    |||    
T  17392379 ttg 17392381  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 17392453 - 17392520
Alignment:
Q  283 ccaaacttcaaactcttaccattctaaaggtttgtttattatagttactaatttttacaggttcttct 350  Q
    |||||||||||||||||| ||||  ||||||||||| |||||||||||||||||||||  ||||||||    
T  17392453 ccaaacttcaaactcttaacattgcaaaggtttgttcattatagttactaatttttaccagttcttct 17392520  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 319
Target Start/End: Original strand, 19806841 - 19806967
Alignment:
Q  193 ccgtgcttgaaaacttaagggaacttcaactaacttggttcgaacgcattcataactgggaggtggtagtgaaaatgctacagaattgtcccaaacttca 292  Q
    ||||| ||||||||||||  || ||||||||| |||||| | |  ||  |||| | ||||| | ||||||||||||||| || |||||||||||||| ||    
T  19806841 ccgtgtttgaaaacttaactgaccttcaactatcttggtgcaatggcgctcatgattgggatgaggtagtgaaaatgctccaaaattgtcccaaactcca 19806940  T
Q  293 aactcttaccattctaaaggtttgttt 319  Q
    ||||||| | |||  ||||||||||||    
T  19806941 aactcttgcaattaaaaaggtttgttt 19806967  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 319
Target Start/End: Original strand, 20111938 - 20112019
Alignment:
Q  238 gcattcataactgggaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattctaaaggtttgttt 319  Q
    |||||||| ||||||  | ||||||||||||||| ||||| ||||||||||||||| | ||||  ||| |||||||||||||    
T  20111938 gcattcatgactggggtgaggtagtgaaaatgctccagaaatgtcccaaacttcaagcacttaaaattgtaaaggtttgttt 20112019  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 19653980 - 19653900
Alignment:
Q  239 cattcataactgggaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattctaaaggtttgttt 319  Q
    ||||||||||||||| | |||  |||||||||||||  ||||||||||||||||| ||||||  |||  ||||||||||||    
T  19653980 cattcataactgggaagaggttatgaaaatgctacaatattgtcccaaacttcaagctcttaaaattaaaaaggtttgttt 19653900  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 13712238 - 13712176
Alignment:
Q  257 ggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattctaaaggtttgttt 319  Q
    |||||||||||||||||| |  |||||||||||||||||||||   ||| |||||||||||||    
T  13712238 ggtagtgaaaatgctacaaagctgtcccaaacttcaaactcttcgaattgtaaaggtttgttt 13712176  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 1347995 - 1347935
Alignment:
Q  259 tagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattctaaaggtttgttt 319  Q
    |||||||||||||  |||||||||| ||||||||||||||  |||||  ||||||||||||    
T  1347995 tagtgaaaatgctcgagaattgtcctaaacttcaaactctctccatttcaaaggtttgttt 1347935  T

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Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 79 - 333
Target Start/End: Complemental strand, 26053204 - 26052955
Alignment:
Q  79 atgtttgattatctgtatttataaaatgtatgtattttcttttttgtcttgtgcctgtgcagatagcacgaagtctttccaataaacaaatcaatacatt 178  Q
    ||||||||| ||||||||||||||     ||||||||||||||||||  |||| || ||||||| |  | |||||||||||||||| |||||||| ||||    
T  26053204 atgtttgat-atctgtatttataa----gatgtattttcttttttgtgatgtggctatgcagattgggcaaagtctttccaataaagaaatcaattcatt 26053110  T
Q  179 tgagaaaagccttcccgtgcttgaaaacttaagggaacttcaactaacttggttcgaacgcattcataactgggaggtggtagtgaaaatgctacagaat 278  Q
    ||| |||||||||||| || ||||||||||||  |||||| |||||  |||||   || |||||||| |||||||||| || ||||||||||||||||||    
T  26053109 tgacaaaagccttcccatgtttgaaaacttaaccgaacttgaactattttggtctcaaggcattcatgactgggaggtagtggtgaaaatgctacagaat 26053010  T
Q  279 tgtcccaaacttcaaactcttaccattctaaaggtttgtttattatagttactaa 333  Q
    ||||||||||||||  |||||  ||||  ||||||||||||| ||||||||||||    
T  26053009 tgtcccaaacttcactctctttacattgcaaaggtttgtttaatatagttactaa 26052955  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 26053578 - 26053532
Alignment:
Q  23 gggtatgatatatgataatgatgcatcttcttttataatcaatatta 69  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  26053578 gggtatgatatatgatgatgattcatcttcttttataatcaatatta 26053532  T

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Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 40602 - 40666
Alignment:
Q  257 ggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattctaaaggtttgtttat 321  Q
    |||| |||||||||| ||||||||||| ||||||||||||||| | |||  ||||||||||||||    
T  40602 ggtaatgaaaatgctccagaattgtccgaaacttcaaactctttcgattaaaaaggtttgtttat 40666  T

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Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 33992 - 34048
Alignment:
Q  265 aaatgctacagaattgtcccaaacttcaaactcttaccattctaaaggtttgtttat 321  Q
    ||||||| ||| ||||||| ||||||||||||||| | |||  ||||||||||||||    
T  33992 aaatgctccagcattgtccgaaacttcaaactctttcgattaaaaaggtttgtttat 34048  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 300
Target Start/End: Original strand, 15784656 - 15784699
Alignment:
Q  257 ggtagtgaaaatgctacagaattgtcccaaacttcaaactctta 300  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||    
T  15784656 ggtagtgaaaatgctacagaattgtccaaaacttcaagctctta 15784699  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 319
Target Start/End: Original strand, 24912861 - 24912923
Alignment:
Q  257 ggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattctaaaggtttgttt 319  Q
    |||||||||||||||  || |||||||||||||||||||||| |  |||| ||||||||||||    
T  24912861 ggtagtgaaaatgctttaggattgtcccaaacttcaaactctaaaaattcaaaaggtttgttt 24912923  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 319
Target Start/End: Original strand, 24890924 - 24891005
Alignment:
Q  238 gcattcataactgggaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattctaaaggtttgttt 319  Q
    |||||||| | ||||| | || ||||||||||||  || |||||||||||||||||| ||| |  |||| ||||||||||||    
T  24890924 gcattcatgattgggacgaggcagtgaaaatgctttaggattgtcccaaacttcaaattctaaaaattcaaaaggtttgttt 24891005  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 318
Target Start/End: Original strand, 32226559 - 32226620
Alignment:
Q  257 ggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattctaaaggtttgtt 318  Q
    ||||||| ||||||| ||  ||||||||||||||||||||||| | |||  |||||||||||    
T  32226559 ggtagtgcaaatgctccattattgtcccaaacttcaaactcttccaatttcaaaggtttgtt 32226620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 32242110 - 32242030
Alignment:
Q  238 gcattcataactgggaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattctaaaggtttgtt 318  Q
    |||||||||| ||| | | |||| || ||||||| ||  |||||||||| |||||||||||| | ||| ||||||||||||    
T  32242110 gcattcataattggtatgaggtactgcaaatgctccattattgtcccaaccttcaaactctttcaattttaaaggtttgtt 32242030  T

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