View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15470_low_3 (Length: 285)
Name: NF15470_low_3
Description: NF15470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15470_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 36700910 - 36700636
Alignment:
| Q |
1 |
atctctttcaactaccatgacccattgcttattcttgagaaataagagtatactttaaatctcagatctatctttatcttaggagaatgagaagacaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36700910 |
atctctttcaactaccatgacccattgcttattcttgagaaataagagtatactttaaatctcagatctatctttatcttaggagaatgagaagacaaag |
36700811 |
T |
|
| Q |
101 |
atcaccttcctcttcatactctagtctctaagatcaaatttttcacttccacttgtccatgtttctgttgagaaatatgaaacaaaatcggttcttttat |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36700810 |
atcaccttcctcttcagactctagtctctaagatcaaatttttcacttccacttgtccatgtttctgttgagaaatatgaaacaaaatcggttcttttat |
36700711 |
T |
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| Q |
201 |
ccttgtacaattccattggccttgattatttttggaacaagatgttccattttggtttaagaaaccacaggttct |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36700710 |
ccttgtacaattccattggccttgattatttttggaacaagatgttccattttggtttcagaaaccacaggttct |
36700636 |
T |
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Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 1481148 - 1481423
Alignment:
| Q |
1 |
atctctttcaactaccatgacccattgcttattcttgagaaataagagtatactttaaatctcagatctatctttatcttaggagaatgagaagacaaag |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
1481148 |
atctctttcaactaccatgatccattgcttattcttgagaaataagagtatactttaaatctcagatctatctttatcttaggagaacgagaagataaat |
1481247 |
T |
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| Q |
101 |
atcaccttcctcttcatactctagtctctaagatcaaatttttcacttccacttgtccatgtttctgttgagaaatatgaaacaaaatcggttcttttat |
200 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
1481248 |
atcaccttcctctttagactctagtctctaagatcaaatttttcacttccacttgtccatgtttctgttgagaaatatgaaacaaaatcagttattttat |
1481347 |
T |
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| Q |
201 |
ccttgtacaattccattggcct-tgattatttttggaacaagatgttccattttggtttaagaaaccacaggttct |
275 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
1481348 |
ccttgtacaactccattggcctatgattatttttggaacaagatgttccattttggttccagaaatcacaggttct |
1481423 |
T |
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