View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15470_low_5 (Length: 220)
Name: NF15470_low_5
Description: NF15470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15470_low_5 |
 | |
|
| [»] scaffold0187 (3 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 37881848 - 37882028
Alignment:
| Q |
17 |
atttctgaatctcaaattcattgccaagctcaacctgatcagtaggatacgaacaatcttttctgtttatccatttttaatttgtttgtacttttctgat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| |||| | |
|
|
| T |
37881848 |
atttctgaatctcaaattcattgccaagctcaacctgatcagtaggatacgaacattattttctgtttatccatttttaatttgtatgtacttctctgtt |
37881947 |
T |
|
| Q |
117 |
gtaattatttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataacctttcaagtttattctctcttca |
197 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
37881948 |
gtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataatctttcaagtttattctttcttca |
37882028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 37911793 - 37911965
Alignment:
| Q |
17 |
atttctgaatctcaaattcattgccaagctcaacctgatcagtaggata--cgaacaatcttttctgtttatccat----ttttaatttgtttgtacttt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| |||||| ||||||||||||| ||| | |
|
|
| T |
37911793 |
atttctgaatctcaaattcattgccaagctcaacctgatcagtaggatatacgaacattattttctgttaatccatccacttttaatttgtttatacct- |
37911891 |
T |
|
| Q |
111 |
tctgatgtaattatttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataacctttcaagttt |
185 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37911892 |
-ctgttgtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataatctttcaagttt |
37911965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 37855620 - 37855817
Alignment:
| Q |
17 |
atttctgaatctcaaattcattgccaagctcaacctgatcagtagg--atacgaacaatcttttctgtttatccatttttaatttgtttgtacttttctg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||| | | |||| |
|
|
| T |
37855620 |
atttctgaatctcaaattcattgccaagctcaacctgatcagtaggatatacgaacattattttctgtttatccatttttaatttgtttgtgcctctctg |
37855719 |
T |
|
| Q |
115 |
atgtaattatt---tattgattatcatttgtgaaccatgccaagtaatg-taaatatgaataacctttcaagtttattctctcttcacgtcctttgct |
208 |
Q |
| |
|
||||| | | ||||||||||||||||| ||| ||| |||||||| | ||||||||||| ||||| |||||||||||||| | ||| |||||| |
|
|
| T |
37855720 |
ttgtaaatggtcactattgattatcatttgtaaactatgataagtaatgtttaatatgaataatatttcatgtttattctctcttaatgtcttttgct |
37855817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 37867808 - 37867898
Alignment:
| Q |
17 |
atttctgaatctcaaattcattgccaagctcaacctgatcagtagg--atacgaacaatcttttctgtttatccatttttaatttgtttgt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
37867808 |
atttctgaatctcaaattcattgccaagctcaacctgatcagtaggatatacgaacattattttctgtttatccatttttaatttgtttgt |
37867898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 6628 - 6435
Alignment:
| Q |
17 |
atttctgaatctcaaattcattgccaagctcaacctgatcagtaggatacgaacaatcttttctgtttatccat----ttttaatttgtttgtacttttc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| | | |
|
|
| T |
6628 |
atttctgaatctcaaattcattgccaagctcaacctgatcagtaggatacgaacaatcttttctgttaatccatccacttttaatttgtttatacct--c |
6531 |
T |
|
| Q |
113 |
tgatgtaattatttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataacctttcaagtttattctctcttcacgtcctttgct |
208 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6530 |
tgttgtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataacctttcaagtttattctctcttcacgtcttttgct |
6435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 16956 - 16772
Alignment:
| Q |
17 |
atttctgaatctcaaattcattgccaagctcaacctgatcagtagg--atacgaacaatcttttctgtttatccatttttaatttgtttgtacttttctg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||| | | |||| |
|
|
| T |
16956 |
atttctgaatctcaaattcattgccaagctcaacctgatcagtaggatatacgaacattattttctgtttatccatttttaatttgtttgtgcctctctg |
16857 |
T |
|
| Q |
115 |
atgtaattatt---tattgattatcatttgtgaaccatgccaagtaatg-taaatatgaataacctttcaagtttattctctctt |
195 |
Q |
| |
|
||||| | | ||||||||||||||||| ||| ||| || ||||| | ||||||||||| ||||| |||||||||||||| |
|
|
| T |
16856 |
ttgtaaatggtcactattgattatcatttgtaaactatgataaataatgtttaatatgaataatatttcatgtttattctctctt |
16772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 27284 - 27100
Alignment:
| Q |
17 |
atttctgaatctcaaattcattgccaagctcaacctgatcagtagg--atacgaacaatcttttctgtttatccatttttaatttgtttgtacttttctg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||| | | |||| |
|
|
| T |
27284 |
atttctgaatctcaaattcattgccaaggtcaacctgatcagtaggatatacgaacattattttctgtttatccatttttaatttgtttgtgcctctctg |
27185 |
T |
|
| Q |
115 |
atgtaattatt---tattgattatcatttgtgaaccatgccaagtaatg-taaatatgaataacctttcaagtttattctctctt |
195 |
Q |
| |
|
||||| | | ||||||||||||||||| ||| ||| || ||||| | ||||||||||| ||||| |||||||||||||| |
|
|
| T |
27184 |
ttgtaaatggtcactattgattatcatttgtaaactatgataattaatgtttaatatgaataatatttcatgtttattctctctt |
27100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University