View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15471_high_12 (Length: 253)
Name: NF15471_high_12
Description: NF15471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15471_high_12 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 28386 - 28134
Alignment:
| Q |
1 |
gaaggctgcaatcgttgaaaaagaagcaatatttgtcactgatgaagttgtggctgcatcaacatcaatggtataaaagtacatattatgtaggtgactt |
100 |
Q |
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| T |
28386 |
gaaggctgcaatcgttgaaaaagaagcaatatttgtcactgatgaagttgtggctgcatcaacatcaatgatataaaagttcatattatgtaggtgactt |
28287 |
T |
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| Q |
101 |
tatagatttcatattaagtggctgcactttgagtaccctgttaattatctcccattttctgctcatttgtcaggcaaaacagtagagttcaagaagttga |
200 |
Q |
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| T |
28286 |
tatagatttcatattaagtggctgcactttgagtaccctgttaattatctcccattttctgctcatttgtcaggcaaaacagtagagttcaaggagttga |
28187 |
T |
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| Q |
201 |
agaatctttaagatatttattttaaatttttagttttactcaacagtactctc |
253 |
Q |
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| T |
28186 |
agaatctttaagatatttattttaaatttttagttttactcaacaatactctc |
28134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 26396100 - 26395848
Alignment:
| Q |
1 |
gaaggctgcaatcgttgaaaaagaagcaatatttgtcactgatgaagttgtggctgcatcaacatcaatggtataaaagtacatattatgtaggtgactt |
100 |
Q |
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| T |
26396100 |
gaaggctgcaatcgttgaaaaagaagcaatatttgtcactgatgaagttgtcgctgcatcaatatcaatggtataaaagttcatattatgtaggtgactt |
26396001 |
T |
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| Q |
101 |
tatagatttcatattaagtggctgcactttgagtaccctgttaattatctcccattttctgctcatttgtcaggcaaaacagtagagttcaagaagttga |
200 |
Q |
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| T |
26396000 |
tatagatttcatattaagtggctgcacattgagtaccctgttaattatctcccattttctgttcatctgtcaggcaaaacaatagagttcaaggagttga |
26395901 |
T |
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| Q |
201 |
agaatctttaagatatttattttaaatttttagttttactcaacagtactctc |
253 |
Q |
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| T |
26395900 |
agaatctttaagatatttattttaaatttttagttttactcaacagtactctc |
26395848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 275496 - 275446
Alignment:
| Q |
1 |
gaaggctgcaatcgttgaaaaagaagcaatatttgtcactgatgaagttgt |
51 |
Q |
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| T |
275496 |
gaaggctgcaatcgttgaaaaagaagcaatatttgtcgctgatgaagttgt |
275446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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