View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15471_high_9 (Length: 307)
Name: NF15471_high_9
Description: NF15471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15471_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 33185835 - 33185556
Alignment:
| Q |
16 |
accatgtcattctccatcatcgacgcttcaaagaagcgaaaacgatgaacgaagattttcccgctacaatctttcggtgaccctggttgtccaatttcac |
115 |
Q |
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| T |
33185835 |
accatgtcattctccatcatcgacgcttcaaagaagcgaaaacgatggacgaagattttcccgctacaatcgttcgctgaccctggttgtccaatttcac |
33185736 |
T |
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| Q |
116 |
cttcaggtcctttccgtgaaaacgttccactttgtcttcaagaacctggtgagcttgaagattatacggttatggggaatcctctttgattcacttttct |
215 |
Q |
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|||||||||| |||||||||||||||| ||| | |||||||||| ||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| |
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| T |
33185735 |
cttcaggtccgttccgtgaaaacgttcgactctttcttcaagaagctggtgagcttgaagattatacggttatgggaaatcctctttggtgcacttttct |
33185636 |
T |
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| Q |
216 |
gattcatgaaaagaagaatctaatggttcctttctatactttt---gaagaagtttataactcttctcatcctttctgtg |
292 |
Q |
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||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||| |
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| T |
33185635 |
gattcatgaaaagaagaatctaatggttcctttctatgctcttgaagaagaagtttataactcttctcatcctttctgtg |
33185556 |
T |
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