View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15471_low_1 (Length: 568)

Name: NF15471_low_1
Description: NF15471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15471_low_1
NF15471_low_1
[»] chr4 (31 HSPs)
chr4 (18-250)||(35036484-35036715)
chr4 (363-559)||(35036914-35037111)
chr4 (454-559)||(55272370-55272476)
chr4 (451-559)||(46827700-46827809)
chr4 (452-559)||(711958-712066)
chr4 (454-559)||(17619146-17619252)
chr4 (453-559)||(32728356-32728463)
chr4 (452-559)||(960864-960972)
chr4 (456-558)||(3756242-3756344)
chr4 (79-168)||(35020343-35020429)
chr4 (242-352)||(35036729-35036845)
chr4 (453-559)||(48435573-48435680)
chr4 (456-559)||(38851515-38851619)
chr4 (451-552)||(28988470-28988572)
chr4 (453-533)||(49229684-49229765)
chr4 (490-559)||(19879990-19880060)
chr4 (455-537)||(41878407-41878490)
chr4 (451-537)||(55966362-55966449)
chr4 (452-537)||(25051691-25051777)
chr4 (452-537)||(28982838-28982924)
chr4 (452-552)||(1771267-1771368)
chr4 (456-552)||(41327544-41327641)
chr4 (454-533)||(27550309-27550389)
chr4 (507-559)||(36004110-36004162)
chr4 (451-537)||(27864561-27864648)
chr4 (453-543)||(48463460-48463551)
chr4 (380-418)||(35037203-35037241)
chr4 (456-537)||(43514702-43514784)
chr4 (103-168)||(35044697-35044762)
chr4 (454-533)||(12496956-12497036)
chr4 (450-537)||(23035976-23036064)
[»] chr3 (20 HSPs)
chr3 (446-559)||(9434116-9434230)
chr3 (452-559)||(10457886-10457994)
chr3 (453-559)||(25996267-25996374)
chr3 (450-559)||(4190259-4190369)
chr3 (452-558)||(52627972-52628079)
chr3 (454-559)||(51757593-51757699)
chr3 (454-559)||(34791829-34791935)
chr3 (451-537)||(24688418-24688505)
chr3 (456-537)||(53581874-53581956)
chr3 (454-553)||(42100688-42100788)
chr3 (455-537)||(42394435-42394518)
chr3 (502-552)||(51249357-51249407)
chr3 (450-537)||(46941049-46941137)
chr3 (452-537)||(47191042-47191127)
chr3 (454-537)||(45126944-45127028)
chr3 (450-537)||(54246164-54246252)
chr3 (455-537)||(54237097-54237180)
chr3 (452-537)||(40808863-40808949)
chr3 (453-537)||(25413680-25413765)
chr3 (454-537)||(36150130-36150214)
[»] chr5 (10 HSPs)
chr5 (453-559)||(17208073-17208180)
chr5 (450-559)||(30622713-30622822)
chr5 (454-559)||(32473388-32473494)
chr5 (450-537)||(7617129-7617217)
chr5 (452-537)||(38470577-38470663)
chr5 (454-537)||(22512305-22512389)
chr5 (452-537)||(18033980-18034066)
chr5 (449-537)||(41334679-41334768)
chr5 (454-537)||(2614665-2614749)
chr5 (454-525)||(33855071-33855143)
[»] chr7 (17 HSPs)
chr7 (454-559)||(31513287-31513393)
chr7 (455-559)||(31408627-31408732)
chr7 (451-559)||(40236916-40237025)
chr7 (451-559)||(27535225-27535334)
chr7 (444-559)||(33384860-33384977)
chr7 (450-537)||(5015391-5015479)
chr7 (453-552)||(9216301-9216400)
chr7 (456-552)||(4638200-4638297)
chr7 (453-537)||(35069720-35069805)
chr7 (454-552)||(42972852-42972951)
chr7 (456-537)||(10573751-10573833)
chr7 (453-537)||(5194247-5194332)
chr7 (453-537)||(24280612-24280697)
chr7 (454-537)||(24001028-24001112)
chr7 (454-537)||(42538447-42538531)
chr7 (453-537)||(43317442-43317527)
chr7 (454-502)||(39998408-39998456)
[»] chr1 (20 HSPs)
chr1 (454-559)||(48119628-48119734)
chr1 (452-559)||(44112675-44112783)
chr1 (454-559)||(35003294-35003400)
chr1 (454-559)||(38335918-38336024)
chr1 (452-559)||(45639726-45639834)
chr1 (453-559)||(38113189-38113296)
chr1 (453-559)||(45705824-45705931)
chr1 (454-559)||(46168383-46168489)
chr1 (453-559)||(45427739-45427846)
chr1 (452-559)||(26585460-26585568)
chr1 (453-559)||(41065152-41065259)
chr1 (454-559)||(35000107-35000213)
chr1 (452-537)||(48498978-48499064)
chr1 (452-510)||(14427345-14427404)
chr1 (450-537)||(5489772-5489860)
chr1 (451-537)||(23989539-23989627)
chr1 (454-537)||(37814778-37814862)
chr1 (454-537)||(43571102-43571186)
chr1 (454-552)||(50448261-50448360)
chr1 (456-537)||(2497578-2497660)
[»] chr8 (17 HSPs)
chr8 (451-559)||(35181513-35181622)
chr8 (452-559)||(34304786-34304894)
chr8 (453-559)||(16603620-16603727)
chr8 (453-559)||(18066712-18066819)
chr8 (450-559)||(16358827-16358938)
chr8 (450-559)||(33629987-33630097)
chr8 (507-559)||(10678146-10678198)
chr8 (453-537)||(2546995-2547080)
chr8 (450-559)||(19386559-19386674)
chr8 (450-537)||(36743499-36743587)
chr8 (456-537)||(26125637-26125719)
chr8 (454-537)||(11582766-11582850)
chr8 (450-537)||(42295191-42295279)
chr8 (250-283)||(10096135-10096168)
chr8 (453-537)||(31384663-31384748)
chr8 (454-537)||(1375542-1375626)
chr8 (454-537)||(29705362-29705446)
[»] chr2 (23 HSPs)
chr2 (451-559)||(43114554-43114663)
chr2 (453-559)||(18491704-18491811)
chr2 (452-559)||(966828-966936)
chr2 (452-559)||(16803966-16804074)
chr2 (452-559)||(16843248-16843356)
chr2 (456-559)||(11825648-11825752)
chr2 (456-559)||(41281968-41282072)
chr2 (454-559)||(12415454-12415560)
chr2 (454-559)||(12427514-12427620)
chr2 (456-559)||(4299414-4299518)
chr2 (456-537)||(6518485-6518566)
chr2 (451-559)||(34895735-34895844)
chr2 (453-559)||(14285675-14285782)
chr2 (491-559)||(4451944-4452013)
chr2 (455-552)||(34817777-34817875)
chr2 (475-559)||(12531657-12531741)
chr2 (455-537)||(19047158-19047241)
chr2 (454-537)||(1750414-1750498)
chr2 (450-537)||(4764742-4764830)
chr2 (451-537)||(12302269-12302356)
chr2 (456-537)||(8896599-8896681)
chr2 (258-287)||(13294249-13294278)
chr2 (453-537)||(42026766-42026853)
[»] scaffold0003 (1 HSPs)
scaffold0003 (456-559)||(45713-45817)
[»] chr6 (17 HSPs)
chr6 (456-559)||(27441544-27441648)
chr6 (452-559)||(33242401-33242509)
chr6 (454-537)||(33253913-33253997)
chr6 (442-537)||(26670025-26670121)
chr6 (451-552)||(3213397-3213499)
chr6 (453-559)||(31109216-31109323)
chr6 (451-537)||(7273351-7273438)
chr6 (456-537)||(24204003-24204085)
chr6 (453-537)||(9698349-9698434)
chr6 (453-537)||(21279928-21280013)
chr6 (453-537)||(21293693-21293778)
chr6 (449-537)||(26466794-26466883)
chr6 (454-537)||(13743237-13743321)
chr6 (454-537)||(13748737-13748821)
chr6 (456-537)||(30735984-30736066)
chr6 (250-287)||(11529644-11529681)
chr6 (450-537)||(7292743-7292831)
[»] scaffold0100 (1 HSPs)
scaffold0100 (454-559)||(35450-35556)
[»] scaffold0119 (1 HSPs)
scaffold0119 (442-537)||(673-769)
[»] scaffold0038 (1 HSPs)
scaffold0038 (455-537)||(112656-112739)
[»] scaffold0385 (1 HSPs)
scaffold0385 (452-537)||(11249-11335)
[»] scaffold0157 (1 HSPs)
scaffold0157 (454-533)||(23441-23521)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 35036484 - 35036715
Alignment:
Q  18 tgttcaagtttggctcgatcaacacaaacgcaacaagaaacctgccggcaccaaacttgacttcatggatgtgctcctttcaaccgttgatgatcaagat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35036484 tgttcaagtttggctcgatcaacacaaacgcaacaagaaacctgccggcaccaaacttgacttcatggatgtgctcctttcaaccgttgatgatcaagat 35036583  T
Q  118 atagatggtcgtgatgctgacaccacaatcaaagccacttgtctggtatgttagtttactcccacccaaaaacataaagcaagtaattgaatccacttcc 217  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35036584 atagatggtcgtgatgctgacaccacaatcaaagcaacttgtctggtatgttagtttactcccacccaaaaacataaagcgagtaattgaatccacttcc 35036683  T
Q  218 acttgnnnnnnnactgaaaaaactcacttttta 250  Q
    |||||       |||||||||||||||||||||    
T  35036684 acttg-tttttaactgaaaaaactcacttttta 35036715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 363 - 559
Target Start/End: Original strand, 35036914 - 35037111
Alignment:
Q  363 agctgccactactagagaaaatacacgaatatagagaaaatacctcaatagctaaatccaattttcaaactattcacaataattttcaaaaggaaaatgt 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35036914 agctgccactactagagaaaatacacgaatatagagaaaatacctcaatagctaaatccaattttcaaactattcacaataattttcaaaagaaaaatgt 35037013  T
Q  463 tacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatattttctctttcatctc 559  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| |||||| ||||    
T  35037014 tacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatattttttctttcttctc 35037111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 454 - 559
Target Start/End: Complemental strand, 55272476 - 55272370
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctt 552  Q
    |||||||||||||||||||  |||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  55272476 ggaaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 55272377  T
Q  553 tcatctc 559  Q
    |||||||    
T  55272376 tcatctc 55272370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 451 - 559
Target Start/End: Complemental strand, 46827809 - 46827700
Alignment:
Q  451 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttct 549  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| || |||||||||||| ||||||||  ||||||||||    
T  46827809 aaaggaaaatgttacatgaacaccctttaatcatacactctattgtacacccaatgcattaagaacgttttggtaaatttatctcacaaacatattttct 46827710  T
Q  550 ctttcatctc 559  Q
    ||||||||||    
T  46827709 ctttcatctc 46827700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 452 - 559
Target Start/End: Original strand, 711958 - 712066
Alignment:
Q  452 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctc 550  Q
    |||||||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||  |||| ||||||    
T  711958 aaggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaaattcatctcacaaacatactttctc 712057  T
Q  551 tttcatctc 559  Q
    |||||||||    
T  712058 tttcatctc 712066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 454 - 559
Target Start/End: Complemental strand, 17619252 - 17619146
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctt 552  Q
    ||||||||||||||||||||  ||||| ||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  17619252 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 17619153  T
Q  553 tcatctc 559  Q
    |||||||    
T  17619152 tcatctc 17619146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 453 - 559
Target Start/End: Original strand, 32728356 - 32728463
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctct 551  Q
    ||||||||||||||||||||  |||||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||  |||| |||||||    
T  32728356 aggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacattttagtaaattcatctcacaatcatactttctct 32728455  T
Q  552 ttcatctc 559  Q
    ||||||||    
T  32728456 ttcatctc 32728463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 452 - 559
Target Start/End: Complemental strand, 960972 - 960864
Alignment:
Q  452 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctc 550  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||| || ||||| |||||||||||||||||||||| | |  | || ||||||    
T  960972 aaggaaaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggtaaattcatcttataatcgtactttctc 960873  T
Q  551 tttcatctc 559  Q
    |||||||||    
T  960872 tttcatctc 960864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 456 - 558
Target Start/End: Complemental strand, 3756344 - 3756242
Alignment:
Q  456 aaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatattttctctttc 554  Q
    |||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||||||| ||||| ||||||| ||||||||  |||| ||| ||||||    
T  3756344 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttagtaaatttatctcacaatcatacttt-tctttc 3756246  T
Q  555 atct 558  Q
    ||||    
T  3756245 atct 3756242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 168
Target Start/End: Original strand, 35020343 - 35020429
Alignment:
Q  79 ttcatggatgtgctcctttcaaccgttgatgatcaagatatagatggtcgtgatgctgacaccacaatcaaagccacttgtctggtatgt 168  Q
    |||||||||||||| |||||||||||||||||   |||| ||||||| ||||||||||| || |||||||||||||||||| ||||||||    
T  35020343 ttcatggatgtgctgctttcaaccgttgatga---agatttagatggccgtgatgctgatactacaatcaaagccacttgtatggtatgt 35020429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 35036729 - 35036845
Alignment:
Q  242 cactttttaattgcagggtaattttgtaagtttcatttaattaactnnnnnnnctaaaatcccttttcaatgt-at-----tattaagctaacaactaat 335  Q
    |||||||| |||||||||||||||||||||||||||||||||||||       | |||||| ||||||||| | ||     |||||||||||||||||||    
T  35036729 cactttttgattgcagggtaattttgtaagtttcatttaattaactaaaaaaacaaaaatctcttttcaatatcatggatgtattaagctaacaactaat 35036828  T
Q  336 ataatttcatactagta 352  Q
    |||||||||||||||||    
T  35036829 ataatttcatactagta 35036845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 453 - 559
Target Start/End: Complemental strand, 48435680 - 48435573
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctct 551  Q
    |||||| ||||||||||||||  ||||| || |||| ||||||||||||| |||||||| |||||| |||||||||||||||||||  |||| ||| |||    
T  48435680 aggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatct 48435581  T
Q  552 ttcatctc 559  Q
    ||||||||    
T  48435580 ttcatctc 48435573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 456 - 559
Target Start/End: Original strand, 38851515 - 38851619
Alignment:
Q  456 aaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctcacagccatattttctctttc 554  Q
    ||||||||||||||| |  |||||| ||||||   || ||||||| |||||||||| |||||||||| ||||||||||||||| ||||| ||||||||||    
T  38851515 aaaatgttacatgaatatcctttaatcatacatcataatgtacactccatgcattatggacattttgataaattcatctcacaaccatactttctctttc 38851614  T
Q  555 atctc 559  Q
    |||||    
T  38851615 atctc 38851619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 451 - 552
Target Start/End: Original strand, 28988470 - 28988572
Alignment:
Q  451 aaaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatattttct 549  Q
    ||||||||||||||||||||||| |||||  |||||||   |||||||| |||||||| || |||||||||| ||||||||||||| | ||| | |||||    
T  28988470 aaaggaaaatgttacatgaacaccctttattcatacacctcattgtacaccccatgcactagggacattttgataaattcatctcataaccacactttct 28988569  T
Q  550 ctt 552  Q
    |||    
T  28988570 ctt 28988572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 453 - 533
Target Start/End: Complemental strand, 49229765 - 49229684
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatct 533  Q
    |||||||||||| |||||||  |||||| ||||||| |||||||||||  ||||||||||||| ||| ||||||||||||||    
T  49229765 aggaaaatgttatatgaacatcctttaatcatacaccctattgtacacttcatgcattaaggatattctggtaaattcatct 49229684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 490 - 559
Target Start/End: Original strand, 19879990 - 19880060
Alignment:
Q  490 ctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctttcatctc 559  Q
    ||||||||||||| ||  |||| ||||||||||||||||||||||||||  |||| |||||||||||||||    
T  19879990 ctattgtacaccccatatattatggacattttggtaaattcatctcacaatcatactttctctttcatctc 19880060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 455 - 537
Target Start/End: Original strand, 41878407 - 41878490
Alignment:
Q  455 gaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||||||||||  |||||||   ||||||||||| || ||||| ||| |||||| ||| |||||||||||    
T  41878407 gaaaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatattttgataagttcatctcaca 41878490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 451 - 537
Target Start/End: Complemental strand, 55966449 - 55966362
Alignment:
Q  451 aaaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||| ||||| |||||  ||||||  | |||||||| |||||| |||| ||| |||||||||| |||||||||||    
T  55966449 aaaggaaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaagttcatctcaca 55966362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 537
Target Start/End: Original strand, 25051691 - 25051777
Alignment:
Q  452 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||| |||||||||| |||||  | ||||| | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  25051691 aaggaaaatgtcacatgaacacactttattcctacaccccattgtacaccctatgtattagggatattttggtaagttcatctcaca 25051777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 537
Target Start/End: Complemental strand, 28982924 - 28982838
Alignment:
Q  452 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||||||| |||||    ||||| |||||||||| |||||  |||| ||| |||||||||| |||||||||||    
T  28982924 aaggaaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaagttcatctcaca 28982838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 452 - 552
Target Start/End: Complemental strand, 1771368 - 1771267
Alignment:
Q  452 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatattttctc 550  Q
    |||||||||||||||||||||| |||||  | ||||| | |||||||| |||||| ||||  || |||||| ||| ||||||||||| ||| ||||| ||    
T  1771368 aaggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataagttcatctcacaaccacattttatc 1771269  T
Q  551 tt 552  Q
    ||    
T  1771268 tt 1771267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 456 - 552
Target Start/End: Complemental strand, 41327641 - 41327544
Alignment:
Q  456 aaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctt 552  Q
    ||||||||||||  |||| |||||  || |||| | ||||||||||  ||||| || |||||||||||||||||||||||||| ||| | ||||||||    
T  41327641 aaaatgttacatagacaccctttattcacacaccccattgtacaccttatgcactacggacattttggtaaattcatctcacatccacactttctctt 41327544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 533
Target Start/End: Original strand, 27550309 - 27550389
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatct 533  Q
    |||||||||||||||||||| |||||    ||||||| |||||||||| |||| |||| ||| |||||||||| |||||||    
T  27550309 ggaaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatct 27550389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 507 - 559
Target Start/End: Complemental strand, 36004162 - 36004110
Alignment:
Q  507 attaaggacattttggtaaattcatctcacagccatattttctctttcatctc 559  Q
    |||| |||||||||| |||||| |||||||| ||||| |||||||||||||||    
T  36004162 attagggacattttgataaatttatctcacaaccatactttctctttcatctc 36004110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 537
Target Start/End: Original strand, 27864561 - 27864648
Alignment:
Q  451 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||| |||||  ||||  ||||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  27864561 aaaggaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcaca 27864648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 543
Target Start/End: Complemental strand, 48463551 - 48463460
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccata 543  Q
    ||||||||||||||| |||||  ||||  |||||| |  |||||||| |||||| |||| ||| |||||||||| ||||||||||| |||||    
T  48463551 aggaaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccata 48463460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 418
Target Start/End: Original strand, 35037203 - 35037241
Alignment:
Q  380 aaaatacacgaatatagagaaaatacctcaatagctaaa 418  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  35037203 aaaattcacgagtatagagaaaatacctcaatagctaaa 35037241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 537
Target Start/End: Complemental strand, 43514784 - 43514702
Alignment:
Q  456 aaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||| |||||  | ||||||| |||||||||  |||| |||| ||  |||||||||| |||||||||||    
T  43514784 aaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaagttcatctcaca 43514702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 35044697 - 35044762
Alignment:
Q  103 gttgatgatcaagatatagatggtcgtgatgctgacaccacaatcaaagccacttgtctggtatgt 168  Q
    |||||||||||||| || ||||||||||||||||  || || |||||| | || ||||||||||||    
T  35044697 gttgatgatcaagaaattgatggtcgtgatgctggaactactatcaaaactacgtgtctggtatgt 35044762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 533
Target Start/End: Original strand, 12496956 - 12497036
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatct 533  Q
    ||||||||||| |||||||| |||||  | ||||||| |||||||| |||||| ||||  || |||||||||| |||||||    
T  12496956 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatct 12497036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 537
Target Start/End: Original strand, 23035976 - 23036064
Alignment:
Q  450 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||||||||   |||||  | ||||| ||||||||||||| ||  |||| ||| ||||| |||| |||||||||||    
T  23035976 aaaaggaaaatgttacatgaacctcctttattcctacaccctattgtacaccctatatattagggatatttttgtaagttcatctcaca 23036064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 5e-39; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 446 - 559
Target Start/End: Original strand, 9434116 - 9434230
Alignment:
Q  446 tttcaaaaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatat 544  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||     
T  9434116 tttcaaaaggaaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatac 9434215  T
Q  545 tttctctttcatctc 559  Q
    |||||||||||||||    
T  9434216 tttctctttcatctc 9434230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 452 - 559
Target Start/End: Complemental strand, 10457994 - 10457886
Alignment:
Q  452 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctc 550  Q
    ||||||||||||||||||||||  ||||| ||||||| ||||||||||||| |||||||||||| ||||||||||||| |||||||| ||||| ||||||    
T  10457994 aaggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaatttatctcacaaccatactttctc 10457895  T
Q  551 tttcatctc 559  Q
    |||||||||    
T  10457894 tttcatctc 10457886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 453 - 559
Target Start/End: Original strand, 25996267 - 25996374
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctct 551  Q
    ||||||||||||||||||||| |||||| ||||||   |||||||||||| ||  ||||||||||||||||||||||||||||||| |||||||||||||    
T  25996267 aggaaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatattttctct 25996366  T
Q  552 ttcatctc 559  Q
    ||||||||    
T  25996367 ttcatctc 25996374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 450 - 559
Target Start/End: Complemental strand, 4190369 - 4190259
Alignment:
Q  450 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcacagccatattttc 548  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||||||||||  ||| ||||  || |||||||||||||||||||||| ||||| ||||    
T  4190369 aaaaggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctcacaaccatactttc 4190270  T
Q  549 tctttcatctc 559  Q
    |||||||||||    
T  4190269 tctttcatctc 4190259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 452 - 558
Target Start/End: Complemental strand, 52628079 - 52627972
Alignment:
Q  452 aaggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcacagccatattttctc 550  Q
    |||||||||||||| ||||||| |||||| ||||||  |||||||||||| ||||||||||| | ||||||||||||||||||||||  |||| ||||||    
T  52628079 aaggaaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggtaaattcatctcacaatcatactttctc 52627980  T
Q  551 tttcatct 558  Q
    ||||||||    
T  52627979 tttcatct 52627972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 454 - 559
Target Start/End: Original strand, 51757593 - 51757699
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcacagccatattttctctt 552  Q
    ||||||| |||||| ||||| |||||| ||||||| |||||||||||| ||||||||| ||||||||| |||| ||||||||||| ||||| ||||||||    
T  51757593 ggaaaatattacataaacaccctttaatcatacaccctattgtacacctcatgcattatggacattttagtaatttcatctcacaaccatactttctctt 51757692  T
Q  553 tcatctc 559  Q
    |||||||    
T  51757693 tcatctc 51757699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 454 - 559
Target Start/End: Original strand, 34791829 - 34791935
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcacagccatattttctctt 552  Q
    |||||||||||||||||||| |||||| |||||||  ||||||| ||| ||||||||| |||||||||  ||| ||||||||||| ||||| ||||||||    
T  34791829 ggaaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcattagggacattttaataatttcatctcacaaccatactttctctt 34791928  T
Q  553 tcatctc 559  Q
    |||||||    
T  34791929 tcatctc 34791935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 451 - 537
Target Start/End: Complemental strand, 24688505 - 24688418
Alignment:
Q  451 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||||||||| |||||    ||||||| ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  24688505 aaaggaaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaagttcatctcaca 24688418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 456 - 537
Target Start/End: Complemental strand, 53581956 - 53581874
Alignment:
Q  456 aaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||||||||||  ||||||||| |||||||| || ||| |||| ||| |||||| ||| |||||||||||    
T  53581956 aaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataagttcatctcaca 53581874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 553
Target Start/End: Original strand, 42100688 - 42100788
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctt 552  Q
    |||||||||||||||||||| |||||  | |||||   ||||||||||| ||| |||| ||| |||||||||| ||||||||||| ||| ||||| ||||    
T  42100688 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacattttatctt 42100787  T
Q  553 t 553  Q
    |    
T  42100788 t 42100788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 455 - 537
Target Start/End: Complemental strand, 42394518 - 42394435
Alignment:
Q  455 gaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||||| |||||  | |||| || ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  42394518 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcaca 42394435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 502 - 552
Target Start/End: Original strand, 51249357 - 51249407
Alignment:
Q  502 catgcattaaggacattttggtaaattcatctcacagccatattttctctt 552  Q
    ||||||||||||| |||||||||||||||||||||| ||| | ||||||||    
T  51249357 catgcattaaggatattttggtaaattcatctcacaaccacactttctctt 51249407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 537
Target Start/End: Original strand, 46941049 - 46941137
Alignment:
Q  450 aaaaggaaaatgttacatgaacactctttaaccataca-ctctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||||||||| |||||  | |||| ||| |||||||| |||||| |||| ||| |||||||||| |||||||||||    
T  46941049 aaaaggaaaatgttacatgaacaccctttattcctacatctc-attgtacaccccatgtattagggatattttggtaagttcatctcaca 46941137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 452 - 537
Target Start/End: Complemental strand, 47191127 - 47191042
Alignment:
Q  452 aaggaaaatgttacatgaacactctttaaccatacactctattgtacacccatgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||||||| |||||  | |||||   |||||||||||||| ||||  || |||||| ||| |||||||||||    
T  47191127 aaggaaaatgttacatgaacaccctttattcctacacctcattgtacacccatgtattagagatattttgataagttcatctcaca 47191042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 537
Target Start/End: Complemental strand, 45127028 - 45126944
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||| ||||| |||||  ||||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  45127028 ggaaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcaca 45126944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 537
Target Start/End: Complemental strand, 54246252 - 54246164
Alignment:
Q  450 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||||||||| |||||  | ||||| | ||||||||||| ||| ||||  || ||||| |||| |||||||||||    
T  54246252 aaaaggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaagttcatctcaca 54246164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 537
Target Start/End: Original strand, 54237097 - 54237180
Alignment:
Q  455 gaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  54237097 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcaca 54237180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 537
Target Start/End: Original strand, 40808863 - 40808949
Alignment:
Q  452 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||| |||||  ||||  | ||||| | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  40808863 aaggaaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttcatctcaca 40808949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 537
Target Start/End: Original strand, 25413680 - 25413765
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||||||| |||||  | ||||| | ||||||||||  ||| |||| ||| ||||| |||| |||||||||||    
T  25413680 aggaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaagttcatctcaca 25413765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 537
Target Start/End: Original strand, 36150130 - 36150214
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||| || |||||  ||||||| | ||| ||||||| ||| || | ||| |||||||||| |||||||||||    
T  36150130 ggaaaatgttacatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggtaagttcatctcaca 36150214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 7e-35; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 453 - 559
Target Start/End: Original strand, 17208073 - 17208180
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctct 551  Q
    ||||||||||||| ||||||| |||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  17208073 aggaaaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaaattcatctcacaaccatactttctct 17208172  T
Q  552 ttcatctc 559  Q
    ||||||||    
T  17208173 ttcatctc 17208180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 450 - 559
Target Start/End: Complemental strand, 30622822 - 30622713
Alignment:
Q  450 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacacccatgcattaaggacattttggtaaattcatctcacagccatattttct 549  Q
    |||||||||||||||||||||||  |||||| ||||||| ||||||||  ||||||||||||||| ||||||||||||| |||||||| ||||| |||||    
T  30622822 aaaaggaaaatgttacatgaacatcctttaatcatacaccctattgtaagcccatgcattaaggatattttggtaaatttatctcacaaccatactttct 30622723  T
Q  550 ctttcatctc 559  Q
    ||||||||||    
T  30622722 ctttcatctc 30622713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 454 - 559
Target Start/End: Complemental strand, 32473494 - 32473388
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcacagccatattttctctt 552  Q
    |||||||||||||||||||| |||||| |||||||  ||||||||||| ||||||||| ||| |||||||||| ||||||||||| ||||| ||||||||    
T  32473494 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaatttcatctcacaaccatactttctctt 32473395  T
Q  553 tcatctc 559  Q
    |||||||    
T  32473394 tcatctc 32473388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 450 - 537
Target Start/End: Original strand, 7617129 - 7617217
Alignment:
Q  450 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||||||||| |||||  ||||||||| ||| |||| |||||| |||| ||| |||||||||| |||||||||||    
T  7617129 aaaaggaaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctcaca 7617217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 452 - 537
Target Start/End: Original strand, 38470577 - 38470663
Alignment:
Q  452 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||| ||||| |||||  |||||| || |||||||| |||||| |||||||| |||||||||||||||| |||||    
T  38470577 aaggaaaatgttacataaacaccctttattcatacattccattgtacaccccatgtattaaggatattttggtaaattcatttcaca 38470663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 454 - 537
Target Start/End: Original strand, 22512305 - 22512389
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||||| |||||  | ||||||| ||||||||| ||||| |||| ||| |||||||||| |||||||||||    
T  22512305 ggaaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctcaca 22512389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 452 - 537
Target Start/End: Original strand, 18033980 - 18034066
Alignment:
Q  452 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||||||| |||||  | ||||||| ||||||||||| ||| |||| ||| ||||| |||| |||||||||||    
T  18033980 aaggaaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttcatctcaca 18034066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 537
Target Start/End: Complemental strand, 41334768 - 41334679
Alignment:
Q  449 caaaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    |||| |||||||||||||||||||| |||||  |||||||   ||| ||||||| ||| |||| ||| |||||||||| |||||||||||    
T  41334768 caaacggaaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcaca 41334679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 537
Target Start/End: Complemental strand, 2614749 - 2614665
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  2614749 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcaca 2614665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 525
Target Start/End: Complemental strand, 33855143 - 33855071
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa 525  Q
    |||||||||||||||||||| |||||  | ||||| | |||||||| |||||| |||| | ||||||||||||    
T  33855143 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattaggaacattttggtaa 33855071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 454 - 559
Target Start/End: Original strand, 31513287 - 31513393
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctt 552  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| |||| |||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  31513287 ggaaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 31513386  T
Q  553 tcatctc 559  Q
    |||||||    
T  31513387 tcatctc 31513393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 455 - 559
Target Start/End: Complemental strand, 31408732 - 31408627
Alignment:
Q  455 gaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatattttctcttt 553  Q
    ||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||| |||||||||    
T  31408732 gaaaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaaattcatttcacaaccatactttctcttt 31408633  T
Q  554 catctc 559  Q
    ||||||    
T  31408632 catctc 31408627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 451 - 559
Target Start/End: Original strand, 40236916 - 40237025
Alignment:
Q  451 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttct 549  Q
    ||||||||||||||||||||||| |||||| ||||||  ||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||    
T  40236916 aaaggaaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatattttct 40237015  T
Q  550 ctttcatctc 559  Q
    ||||||||||    
T  40237016 ctttcatctc 40237025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 451 - 559
Target Start/End: Complemental strand, 27535334 - 27535225
Alignment:
Q  451 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctcacagccatattttct 549  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||  |||| ||||||||||||| ||||||||||| | ||| |||||    
T  27535334 aaaggaaaatgttacatgaacaccctttaatcatacactctattgtacactccatgtgttaaagacattttggtaatttcatctcacaactatactttct 27535235  T
Q  550 ctttcatctc 559  Q
    ||||||||||    
T  27535234 ctttcatctc 27535225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 444 - 559
Target Start/End: Original strand, 33384860 - 33384977
Alignment:
Q  444 attttcaaaaggaaaatgttacatgaacactctttaaccatacactc-tattgtacac-ccatgcattaaggacattttggtaaattcatctcacagcca 541  Q
    ||||| |||||||||||||||||||||||   ||||| ||||||| | ||||||| || |||||||||| ||||||||||||||||||||||||||  ||    
T  33384860 attttgaaaaggaaaatgttacatgaacatcatttaatcatacacccctattgtatactccatgcattagggacattttggtaaattcatctcacaaaca 33384959  T
Q  542 tattttctctttcatctc 559  Q
    || |||||||||||||||    
T  33384960 tactttctctttcatctc 33384977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 450 - 537
Target Start/End: Original strand, 5015391 - 5015479
Alignment:
Q  450 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||||||||||||||||    ||||||| |||||||||| |||| |||| ||| |||||||||| |||||||||||    
T  5015391 aaaaggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcaca 5015479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 453 - 552
Target Start/End: Original strand, 9216301 - 9216400
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtacacccatgcattaaggacattttggtaaattcatctcacagccatattttctctt 552  Q
    ||||||||||||||||||||| |||||  | || |  |||||||||||||||||||||  || |||||||||| ||||||||||| ||| ||||| ||||    
T  9216301 aggaaaatgttacatgaacaccctttattcctatatcctattgtacacccatgcattagagatattttggtaagttcatctcacaaccacattttatctt 9216400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 456 - 552
Target Start/End: Complemental strand, 4638297 - 4638200
Alignment:
Q  456 aaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatattttctctt 552  Q
    ||||||||||||||||||  ||||  ||||||||| |||||||| |||||  |||| ||| |||||||||| ||||||||||| ||||| ||| ||||    
T  4638297 aaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttcatctcacaaccatactttatctt 4638200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 453 - 537
Target Start/End: Original strand, 35069720 - 35069805
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||||||||||||  | |||||   |||||||||| |||| |||| ||| |||||||||| |||||||||||    
T  35069720 aggaaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcaca 35069805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 454 - 552
Target Start/End: Original strand, 42972852 - 42972951
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcacagccatattttctctt 552  Q
    |||||||||||| ||||||  |||||  | ||||||| |||||||||| |||| |||| ||| |||||||||| ||||||||||| ||| ||||| ||||    
T  42972852 ggaaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacattttatctt 42972951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 456 - 537
Target Start/End: Original strand, 10573751 - 10573833
Alignment:
Q  456 aaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||| ||||| |||||  ||||||  |||||||||| |||||| |||| | | ||||||||||||||||||||||    
T  10573751 aaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaaattcatctcaca 10573833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 453 - 537
Target Start/End: Complemental strand, 5194332 - 5194247
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||||||  ||||  |||||||   ||||||||||| |||  ||||||| |||||| |||||||||||||||    
T  5194332 aggaaaatgttacatgaacaccatttattcatacacctcattgtacaccctatgttttaaggatattttgataaattcatctcaca 5194247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 453 - 537
Target Start/End: Complemental strand, 24280697 - 24280612
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||| ||||||| |||||  ||||||| ||||| |||| |||||||| ||   | ||||||||||||||||||||||    
T  24280697 aggaaaatgttacgtgaacaccctttattcatacaccctattctacatcccatgcactagaaatattttggtaaattcatctcaca 24280612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 537
Target Start/End: Complemental strand, 24001112 - 24001028
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  24001112 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcaca 24001028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 537
Target Start/End: Complemental strand, 42538531 - 42538447
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  42538531 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcaca 42538447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 537
Target Start/End: Original strand, 43317442 - 43317527
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||||||  ||||  |||||||   |||||||| || |||| ||| ||| |||||| |||||||||||||||    
T  43317442 aggaaaatgttacatgaacaccatttattcatacacctcattgtacatcctatgctttagggatattttgataaattcatctcaca 43317527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 502
Target Start/End: Original strand, 39998408 - 39998456
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc 502  Q
    ||||||||||||||||||||  ||||| ||||||  |||||||||||||    
T  39998408 ggaaaatgttacatgaacacattttaatcatacatcctattgtacaccc 39998456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 454 - 559
Target Start/End: Original strand, 48119628 - 48119734
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctt 552  Q
    |||||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  48119628 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 48119727  T
Q  553 tcatctc 559  Q
    |||||||    
T  48119728 tcatctc 48119734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 452 - 559
Target Start/End: Original strand, 44112675 - 44112783
Alignment:
Q  452 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctc 550  Q
    |||||||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| ||||||    
T  44112675 aaggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctc 44112774  T
Q  551 tttcatctc 559  Q
    |||||||||    
T  44112775 tttcatctc 44112783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 454 - 559
Target Start/End: Original strand, 35003294 - 35003400
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctt 552  Q
    |||||||||||||||||||| |||||| ||||||| ||||||||||||| || ||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  35003294 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaaattcatctcacaaccatactttctctt 35003393  T
Q  553 tcatctc 559  Q
    |||||||    
T  35003394 tcatctc 35003400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 454 - 559
Target Start/End: Original strand, 38335918 - 38336024
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatattttctctt 552  Q
    |||||||||||||||||||| |||||| |||||||  ||||||||| ||||||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  38335918 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 38336017  T
Q  553 tcatctc 559  Q
    |||||||    
T  38336018 tcatctc 38336024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 452 - 559
Target Start/End: Complemental strand, 45639834 - 45639726
Alignment:
Q  452 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctc 550  Q
    ||||||||||||||||||||||||||||| ||||||  ||||||||||||| || ||||||||| ||||||||||||||||||||||  |||| ||||||    
T  45639834 aaggaaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaaattcatctcacaatcatactttctc 45639735  T
Q  551 tttcatctc 559  Q
    |||||||||    
T  45639734 tttcatctc 45639726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 453 - 559
Target Start/End: Complemental strand, 38113296 - 38113189
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctct 551  Q
    |||||||||||| |||||||| |||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| || ||||    
T  38113296 aggaaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggtaaattcatctcacaaccatacttactct 38113197  T
Q  552 ttcatctc 559  Q
    ||||||||    
T  38113196 ttcatctc 38113189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 453 - 559
Target Start/End: Original strand, 45705824 - 45705931
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctcacagccatattttctct 551  Q
    |||||||||||| |||||||| |||||| |||||| |||||||||||| |||||||||| |||||||||| ||||||||||||||| ||||| |||||||    
T  45705824 aggaaaatgttatatgaacaccctttaatcatacattctattgtacactccatgcattatggacattttgataaattcatctcacaaccatactttctct 45705923  T
Q  552 ttcatctc 559  Q
    ||||||||    
T  45705924 ttcatctc 45705931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 454 - 559
Target Start/End: Original strand, 46168383 - 46168489
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccca-tgcattaaggacattttggtaaattcatctcacagccatattttctctt 552  Q
    |||||||||||||||||||| |||||| |||| |  |||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  46168383 ggaaaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 46168482  T
Q  553 tcatctc 559  Q
    |||||||    
T  46168483 tcatctc 46168489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 453 - 559
Target Start/End: Complemental strand, 45427846 - 45427739
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctcacagccatattttctct 551  Q
    |||||||||||||||||| ||  ||||| ||||||| ||||||||||| |||||||||| |||||||||||||| ||||||||||| ||||| |||||||    
T  45427846 aggaaaatgttacatgaataccttttaatcatacaccctattgtacactccatgcattagggacattttggtaatttcatctcacaaccatactttctct 45427747  T
Q  552 ttcatctc 559  Q
    ||||||||    
T  45427746 ttcatctc 45427739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 452 - 559
Target Start/End: Original strand, 26585460 - 26585568
Alignment:
Q  452 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctc 550  Q
    ||||||||||||| ||||||| ||||||| |||||||| |||||||||||| |||||||||||| ||||| ||||||||||||| ||  |||| ||||||    
T  26585460 aaggaaaatgttagatgaacattctttaatcatacactatattgtacaccccatgcattaaggatattttagtaaattcatctcgcaatcatactttctc 26585559  T
Q  551 tttcatctc 559  Q
    |||||||||    
T  26585560 tttcatctc 26585568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 453 - 559
Target Start/End: Original strand, 41065152 - 41065259
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctct 551  Q
    ||||||||||||||||||||| |||||| ||||||| || |||||||||| |||||||| || ||||||||||| ||||||||||| ||||| |||||||    
T  41065152 aggaaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattaggggcattttggtaatttcatctcacaaccatactttctct 41065251  T
Q  552 ttcatctc 559  Q
    ||| ||||    
T  41065252 ttcctctc 41065259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 454 - 559
Target Start/End: Complemental strand, 35000213 - 35000107
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcacagccatattttctctt 552  Q
    ||||||||||||||||||||  ||||| |||||||||||||||| ||  |||| |||| |||||||||| |||||| |||||||| ||||| ||||||||    
T  35000213 ggaaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacattttgataaatttatctcacaaccatactttctctt 35000114  T
Q  553 tcatctc 559  Q
    |||||||    
T  35000113 tcatctc 35000107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 452 - 537
Target Start/End: Complemental strand, 48499064 - 48498978
Alignment:
Q  452 aaggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||||||||||||||    ||||||| |||||||||| |||| |||| ||| |||||||||| |||||||||||    
T  48499064 aaggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcaca 48498978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 452 - 510
Target Start/End: Original strand, 14427345 - 14427404
Alignment:
Q  452 aaggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcatta 510  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||||| |||||||||    
T  14427345 aaggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcatta 14427404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 537
Target Start/End: Original strand, 5489772 - 5489860
Alignment:
Q  450 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  5489772 aaaaggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcaca 5489860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 451 - 537
Target Start/End: Complemental strand, 23989627 - 23989539
Alignment:
Q  451 aaaggaaaatgttacatgaacactc-tttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||||||||| | ||||  ||||||||| |||||| |||| ||| |||| ||| ||||||||||||| ||||||||    
T  23989627 aaaggaaaatgttacatgaacacccttttattcatacactcaattgtataccctatgtattagggatattttggtaaatttatctcaca 23989539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 454 - 537
Target Start/End: Original strand, 37814778 - 37814862
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactct-attgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||| ||||| |||||  |||||| ||| ||||||||||| ||| |||||||| |||||||||||||||| |||||    
T  37814778 ggaaaatgttacataaacaccctttattcataca-tctcattgtacaccccatgtattaaggatattttggtaaattcatttcaca 37814862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 537
Target Start/End: Complemental strand, 43571186 - 43571102
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||||| |||||  | |||||   ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  43571186 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcaca 43571102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 552
Target Start/End: Complemental strand, 50448360 - 50448261
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcacagccatattttctctt 552  Q
    ||||||||||||||||||||||||||    ||||||| ||||||||||  ||| |||| ||| ||||| |||| ||||||| ||| ||| ||||| ||||    
T  50448360 ggaaaatgttacatgaacactctttatttctacactccattgtacaccttatgtattagggatatttttgtaagttcatcttacaaccacattttatctt 50448261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 537
Target Start/End: Complemental strand, 2497660 - 2497578
Alignment:
Q  456 aaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||| |||||  ||||  |||||| || ||||||||||| ||  |||||||| |||||||||| |||||||||||    
T  2497660 aaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttcatctcaca 2497578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 451 - 559
Target Start/End: Original strand, 35181513 - 35181622
Alignment:
Q  451 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttct 549  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| |||||    
T  35181513 aaaggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttct 35181612  T
Q  550 ctttcatctc 559  Q
    ||||||||||    
T  35181613 ctttcatctc 35181622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 452 - 559
Target Start/End: Original strand, 34304786 - 34304894
Alignment:
Q  452 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctc 550  Q
    |||||||||||||||||||||  |||||| ||||||| ||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| ||||||    
T  34304786 aaggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctc 34304885  T
Q  551 tttcatctc 559  Q
    |||||||||    
T  34304886 tttcatctc 34304894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 453 - 559
Target Start/End: Complemental strand, 16603727 - 16603620
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctct 551  Q
    |||||||||||||||| |||| |||||| |||||||  |||| ||||||| ||||||||| ||||||||||||||||||||||||| ||||| || ||||    
T  16603727 aggaaaatgttacatgcacaccctttaatcatacaccttattatacaccccatgcattaaagacattttggtaaattcatctcacaaccatacttactct 16603628  T
Q  552 ttcatctc 559  Q
    ||||||||    
T  16603627 ttcatctc 16603620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 453 - 559
Target Start/End: Complemental strand, 18066819 - 18066712
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatattttctct 551  Q
    ||||||||||||||||||||| |||||| |||||| ||||||||||| |||||| |||| ||| ||||| |||| ||||||||||| ||||| |||||||    
T  18066819 aggaaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaatttcatctcacaaccatactttctct 18066720  T
Q  552 ttcatctc 559  Q
    ||||||||    
T  18066719 ttcatctc 18066712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 450 - 559
Target Start/End: Complemental strand, 16358938 - 16358827
Alignment:
Q  450 aaaaggaaaatgttacat-gaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatatttt 547  Q
    |||| ||||||||||||| ||| || |||||| ||||||| |||||||||| ||||||||||||| | |||||| ||||||||||||||| ||||| |||    
T  16358938 aaaaagaaaatgttacattgaagaccctttaatcatacaccctattgtacatcccatgcattaagaatattttgataaattcatctcacaaccatacttt 16358839  T
Q  548 ctctttcatctc 559  Q
    || |||||||||    
T  16358838 ctttttcatctc 16358827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 450 - 559
Target Start/End: Complemental strand, 33630097 - 33629987
Alignment:
Q  450 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttc 548  Q
    ||||| ||||||||||| |||||| |||||| |||||||   ||||||||||| |||||||| ||||||||| |||| ||||||||||| | ||| ||||    
T  33630097 aaaagaaaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaatttcatctcacaactatactttc 33629998  T
Q  549 tctttcatctc 559  Q
    |||||||||||    
T  33629997 tctttcatctc 33629987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 507 - 559
Target Start/End: Complemental strand, 10678198 - 10678146
Alignment:
Q  507 attaaggacattttggtaaattcatctcacagccatattttctctttcatctc 559  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  10678198 attaaggacattttggtaaattcatctcacaaccatactttctctttcatctc 10678146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 453 - 537
Target Start/End: Original strand, 2546995 - 2547080
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||||||||||||    ||||||| |||||||||| |||| |||| ||| ||||| |||| |||||||||||    
T  2546995 aggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaagttcatctcaca 2547080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 559
Target Start/End: Complemental strand, 19386674 - 19386559
Alignment:
Q  450 aaaaggaaaatgttacatgaacactctttaaccatacactctattgta------cacccatgcattaaggacattttggtaaattcatctcacagccata 543  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||| ||      |   ||||||||||| |  ||||| ||||||||||||||| | |||    
T  19386674 aaaaggaaaatgttacatgaacaccctttaatcatacaccctattatactttctctttcatgcattaagaatgttttgataaattcatctcacaactata 19386575  T
Q  544 ttttctctttcatctc 559  Q
     |||||||||||||||    
T  19386574 ctttctctttcatctc 19386559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 537
Target Start/End: Complemental strand, 36743587 - 36743499
Alignment:
Q  450 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  36743587 aaaaggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcaca 36743499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 456 - 537
Target Start/End: Original strand, 26125637 - 26125719
Alignment:
Q  456 aaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||| ||||| |||||  |||||| || ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  26125637 aaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctcaca 26125719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 537
Target Start/End: Original strand, 11582766 - 11582850
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  11582766 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcaca 11582850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 537
Target Start/End: Original strand, 42295191 - 42295279
Alignment:
Q  450 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||| |||||||||||||||||| |||||  | |||||   ||||||||| ||||| |||| ||| |||||||||| |||||||||||    
T  42295191 aaaagaaaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttcatctcaca 42295279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 10096135 - 10096168
Alignment:
Q  250 aattgcagggtaattttgtaagtttcatttaatt 283  Q
    ||||| ||||||||||||||||||||||||||||    
T  10096135 aattgaagggtaattttgtaagtttcatttaatt 10096168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 537
Target Start/End: Original strand, 31384663 - 31384748
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||| | |||||||||||| |||||  | |||| ||||||||||| |||||| |||| | | |||||||||| |||||||||||    
T  31384663 aggaaagtattacatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaagttcatctcaca 31384748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 537
Target Start/End: Original strand, 1375542 - 1375626
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||| ||||||||||||  ||||  ||||||| | |||||||| |||||  |||| ||| ||||||||||||| ||||||||    
T  1375542 ggaaaattttacatgaacaccttttattcatacacccaattgtacaccccatatattagggatattttggtaaatttatctcaca 1375626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 537
Target Start/End: Original strand, 29705362 - 29705446
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||||| |||||    ||||| | |||||||| |||||| |||| ||| |||||| ||| |||||||||||    
T  29705362 ggaaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttgataagttcatctcaca 29705446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 451 - 559
Target Start/End: Original strand, 43114554 - 43114663
Alignment:
Q  451 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttct 549  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| |||||    
T  43114554 aaaggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttct 43114653  T
Q  550 ctttcatctc 559  Q
    ||||||||||    
T  43114654 ctttcatctc 43114663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 453 - 559
Target Start/End: Original strand, 18491704 - 18491811
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcacagccatattttctct 551  Q
    ||||||||||||||||||||| |||||| ||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| || ||||    
T  18491704 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggtaaattcatctcacaaccatacttactct 18491803  T
Q  552 ttcatctc 559  Q
    ||||||||    
T  18491804 ttcatctc 18491811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 452 - 559
Target Start/End: Complemental strand, 966936 - 966828
Alignment:
Q  452 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctc 550  Q
    |||||||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||||| || |||||||||||||||||||||  |||| ||||||    
T  966936 aaggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaagaacgttttggtaaattcatctcacaaacatactttctc 966837  T
Q  551 tttcatctc 559  Q
    |||||||||    
T  966836 tttcatctc 966828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 452 - 559
Target Start/End: Original strand, 16803966 - 16804074
Alignment:
Q  452 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatattttctc 550  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||| |||||||||| ||| ||||||||||| ||||| ||||||    
T  16803966 aaggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctc 16804065  T
Q  551 tttcatctc 559  Q
    |||||||||    
T  16804066 tttcatctc 16804074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 452 - 559
Target Start/End: Original strand, 16843248 - 16843356
Alignment:
Q  452 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatattttctc 550  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||| |||||||||| ||| ||||||||||| ||||| ||||||    
T  16843248 aaggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctc 16843347  T
Q  551 tttcatctc 559  Q
    |||||||||    
T  16843348 tttcatctc 16843356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 456 - 559
Target Start/End: Complemental strand, 11825752 - 11825648
Alignment:
Q  456 aaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctttc 554  Q
    |||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||| |||||||||||||| |||||||||||  |||| ||||||||||    
T  11825752 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaatcatactttctctttc 11825653  T
Q  555 atctc 559  Q
    |||||    
T  11825652 atctc 11825648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 456 - 559
Target Start/End: Complemental strand, 41282072 - 41281968
Alignment:
Q  456 aaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctttc 554  Q
    |||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||| |||||||||| ||| ||||||||||| ||||| ||||||||||    
T  41282072 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttgataatttcatctcacaaccatactttctctttc 41281973  T
Q  555 atctc 559  Q
    |||||    
T  41281972 atctc 41281968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 454 - 559
Target Start/End: Complemental strand, 12415560 - 12415454
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctt 552  Q
    |||||||||||||||||||| |||||| |||||||  |||||||||||| |||||||| |||||||||||||| || |||||||| ||||| ||||||||    
T  12415560 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttctctt 12415461  T
Q  553 tcatctc 559  Q
    |||||||    
T  12415460 tcatctc 12415454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 454 - 559
Target Start/End: Complemental strand, 12427620 - 12427514
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctt 552  Q
    |||||||||||||||||||| |||||| |||||||  |||||||||||| |||||||| |||||||||||||| || |||||||| ||||| ||||||||    
T  12427620 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttctctt 12427521  T
Q  553 tcatctc 559  Q
    |||||||    
T  12427520 tcatctc 12427514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 456 - 559
Target Start/End: Complemental strand, 4299518 - 4299414
Alignment:
Q  456 aaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctcacagccatattttctctttc 554  Q
    ||||||||| |||||||| |||||| ||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||  |||| || ||||||     
T  4299518 aaaatgttatatgaacaccctttaatcatacaccctattgtacactccatgcattaatgacattttggtaaattcatctcacaatcatacttactcttta 4299419  T
Q  555 atctc 559  Q
    |||||    
T  4299418 atctc 4299414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 456 - 537
Target Start/End: Complemental strand, 6518566 - 6518485
Alignment:
Q  456 aaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||    
T  6518566 aaaatgttacatgaacac-ctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcaca 6518485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 451 - 559
Target Start/End: Complemental strand, 34895844 - 34895735
Alignment:
Q  451 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttct 549  Q
    |||||||| ||||||||||||||  ||||| || |||| ||||||||||||| |||||||| |||||| |||||||||||||||||||  |||| ||| |    
T  34895844 aaaggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttat 34895745  T
Q  550 ctttcatctc 559  Q
    ||||||||||    
T  34895744 ctttcatctc 34895735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 453 - 559
Target Start/End: Original strand, 14285675 - 14285782
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctct 551  Q
    |||||||| |||||  ||||| |||||| ||||||| ||||||||||||| ||  ||||| || |||||||||||||||||||| || |||| |||||||    
T  14285675 aggaaaatattacacaaacaccctttaatcatacaccctattgtacaccctatatattaaagatattttggtaaattcatctcagagtcatactttctct 14285774  T
Q  552 ttcatctc 559  Q
    ||||||||    
T  14285775 ttcatctc 14285782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 491 - 559
Target Start/End: Complemental strand, 4452013 - 4451944
Alignment:
Q  491 tattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctttcatctc 559  Q
    |||||||||||  |||||||| ||| |||||||||||||||||||||| ||||| |||||||||||||||    
T  4452013 tattgtacaccatatgcattagggatattttggtaaattcatctcacaaccatactttctctttcatctc 4451944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 455 - 552
Target Start/End: Complemental strand, 34817875 - 34817777
Alignment:
Q  455 gaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctt 552  Q
    ||||||||||||||||||| |||||  || ||||   ||||||||||| ||||| || | |||||||||||||||||||||||| ||| | ||||||||    
T  34817875 gaaaatgttacatgaacaccctttattcacacacctcattgtacaccccatgcactacgcacattttggtaaattcatctcacaaccacactttctctt 34817777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 475 - 559
Target Start/End: Complemental strand, 12531741 - 12531657
Alignment:
Q  475 ctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcacagccatattttctctttcatctc 559  Q
    |||||| ||||||| | |||||||||| || |||||| || | ||||||||||||||||||||| ||||| |||||||||||||||    
T  12531741 ctttaatcatacacccaattgtacacctcaagcattatgggc-ttttggtaaattcatctcacaaccatactttctctttcatctc 12531657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 455 - 537
Target Start/End: Original strand, 19047158 - 19047241
Alignment:
Q  455 gaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||||| |||||  | |||| || ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  19047158 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcaca 19047241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 537
Target Start/End: Original strand, 1750414 - 1750498
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||||| |||||  | ||||| | ||||||||||| ||| |||| ||| ||||| |||| |||||||||||    
T  1750414 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcaca 1750498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 537
Target Start/End: Complemental strand, 4764830 - 4764742
Alignment:
Q  450 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||| |||||  ||||  | ||||| |||||||||| |||||| ||||   | ||||||||||||||||||||||    
T  4764830 aaaaggaaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtattataaatattttggtaaattcatctcaca 4764742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 537
Target Start/End: Complemental strand, 12302356 - 12302269
Alignment:
Q  451 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||||||||| |||||    ||||| | ||||||||||| ||| |||| ||| ||||| |||| |||||||||||    
T  12302356 aaaggaaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcaca 12302269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 537
Target Start/End: Complemental strand, 8896681 - 8896599
Alignment:
Q  456 aaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    |||||||||||||||||| |||||  || ||| || ||||||||||| || || || | | ||||||||||||||||||||||    
T  8896681 aaaatgttacatgaacaccctttattcacacattccattgtacaccctatacaataggaatattttggtaaattcatctcaca 8896599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 287
Target Start/End: Complemental strand, 13294278 - 13294249
Alignment:
Q  258 ggtaattttgtaagtttcatttaattaact 287  Q
    ||||||||||||||||||||||||||||||    
T  13294278 ggtaattttgtaagtttcatttaattaact 13294249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 537
Target Start/End: Original strand, 42026766 - 42026853
Alignment:
Q  453 aggaaaatgttacatgaacactc--tttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||||||| |  ||||  |||||| || |||||||| |||  |||||| ||| ||||||| ||||||||||||||    
T  42026766 aggaaaatgttacatgaacacccaatttattcatacattccattgtacatcccgcgcattagggatattttggcaaattcatctcaca 42026853  T

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Target: scaffold0003 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 456 - 559
Target Start/End: Complemental strand, 45817 - 45713
Alignment:
Q  456 aaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctttc 554  Q
    |||||||||||||||||| |||||| ||||||| |||||||||| || ||| |||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  45817 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctttc 45718  T
Q  555 atctc 559  Q
    |||||    
T  45717 atctc 45713  T

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Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 456 - 559
Target Start/End: Original strand, 27441544 - 27441648
Alignment:
Q  456 aaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctttc 554  Q
    |||||||||||||||||| |||||| ||||||| |||||||||| || ||| |||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  27441544 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctttc 27441643  T
Q  555 atctc 559  Q
    |||||    
T  27441644 atctc 27441648  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 452 - 559
Target Start/End: Original strand, 33242401 - 33242509
Alignment:
Q  452 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctc 550  Q
    ||||||||||||||||||||||  ||||| |||||||  |||||||||||| ||| |||||||||||||||||||||||||||||||  |||| ||||||    
T  33242401 aaggaaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaaattcatctcacaaacatactttctc 33242500  T
Q  551 tttcatctc 559  Q
    |||||||||    
T  33242501 tttcatctc 33242509  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 454 - 537
Target Start/End: Original strand, 33253913 - 33253997
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||||||  ||||| || |||| ||||||||||||| |||||||| |||||| |||||||||||||||||||    
T  33253913 ggaaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcaca 33253997  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 442 - 537
Target Start/End: Complemental strand, 26670121 - 26670025
Alignment:
Q  442 taattttcaaaaggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||| |||||||||||||||||||||||| |||||  | |||||   |||||||||| |||| |||| ||| |||||||||| |||||||||||    
T  26670121 taattttaaaaaggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcaca 26670025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 451 - 552
Target Start/End: Original strand, 3213397 - 3213499
Alignment:
Q  451 aaaggaaaatgttacatgaacactctttaaccatacactct-attgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttc 548  Q
    ||||||||||||||||| ||||| |||||  |||||| ||| ||||||||||| ||| |||||||| |||||||||||||||| ||||| ||||| |||     
T  3213397 aaaggaaaatgttacataaacaccctttattcataca-tctcattgtacaccccatgtattaaggatattttggtaaattcatttcacaaccatacttta 3213495  T
Q  549 tctt 552  Q
    ||||    
T  3213496 tctt 3213499  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 453 - 559
Target Start/End: Complemental strand, 31109323 - 31109216
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatattttctct 551  Q
    ||||||||||||||||||||| |||||| ||||||  | ||| |||| |||||||| || ||| |||||| |||||||| || ||  ||| |||||||||    
T  31109323 aggaaaatgttacatgaacaccctttaatcatacatcccattatacaccccatgcactagggatattttgataaattcaacttacgaccacattttctct 31109224  T
Q  552 ttcatctc 559  Q
    ||||||||    
T  31109223 ttcatctc 31109216  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 451 - 537
Target Start/End: Complemental strand, 7273438 - 7273351
Alignment:
Q  451 aaaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||||||||| |||||  | |||||  ||||||||| |||||| ||||  || |||||||||| |||||||||||    
T  7273438 aaaggaaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttcatctcaca 7273351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 456 - 537
Target Start/End: Complemental strand, 24204085 - 24204003
Alignment:
Q  456 aaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||||  ||||  | ||||| ||||||||||| ||||| |||| ||| |||||||||| |||||||||||    
T  24204085 aaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttcatctcaca 24204003  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 453 - 537
Target Start/End: Complemental strand, 9698434 - 9698349
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  9698434 aggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcaca 9698349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 453 - 537
Target Start/End: Original strand, 21279928 - 21280013
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||||||| |||||    |||| || |||| ||| |||||| |||| ||| ||||||||||||||||||||||    
T  21279928 aggaaaatgttacatgaacaccctttatttctacattccattgcacatcccatgtattagggatattttggtaaattcatctcaca 21280013  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 453 - 537
Target Start/End: Complemental strand, 21293778 - 21293693
Alignment:
Q  453 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||| ||||| |||||  |||||| |  | ||||||||| ||| |||||||| |||||||||||||||| |||||    
T  21293778 aggaaaatgttacataaacaccctttattcatacatttcactgtacaccccatgtattaaggatattttggtaaattcatttcaca 21293693  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 537
Target Start/End: Original strand, 26466794 - 26466883
Alignment:
Q  449 caaaaggaaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||||| ||||| |||||  | ||||| | ||||||||| ||||| |||| ||  |||||||||| |||||||||||    
T  26466794 caaaaggaaaatgttacataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggtaagttcatctcaca 26466883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 537
Target Start/End: Complemental strand, 13743321 - 13743237
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||||||  ||||  ||||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  13743321 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcaca 13743237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 537
Target Start/End: Complemental strand, 13748821 - 13748737
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||||||  ||||  ||||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  13748821 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcaca 13748737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 537
Target Start/End: Original strand, 30735984 - 30736066
Alignment:
Q  456 aaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||||| ||||  | ||||| | |||||||||| |||| ||||  || |||||||||| |||||||||||    
T  30735984 aaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaagttcatctcaca 30736066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 11529681 - 11529644
Alignment:
Q  250 aattgcagggtaattttgtaagtttcatttaattaact 287  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  11529681 aattgaagggtaattttgtaaatttcatttaattaact 11529644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 537
Target Start/End: Original strand, 7292743 - 7292831
Alignment:
Q  450 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||| ||||||  ||||  |||||||   ||| ||||||| ||| |||| ||| |||||||||| |||||||||||    
T  7292743 aaaaggaaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcaca 7292831  T

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Target: scaffold0100 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 454 - 559
Target Start/End: Complemental strand, 35556 - 35450
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctt 552  Q
    |||||||||||||| |||||  ||||| |||||||  |||||||||||| |||||||| |||||| ||||||||||||||||||| ||||| ||||||||    
T  35556 ggaaaatgttacataaacaccatttaatcatacaccatattgtacaccccatgcattagggacatattggtaaattcatctcacaaccatactttctctt 35457  T
Q  553 tcatctc 559  Q
    |||||||    
T  35456 tcatctc 35450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 442 - 537
Target Start/End: Original strand, 673 - 769
Alignment:
Q  442 taattttcaaaaggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||| |||||||||||||||||||||||| |||||  | |||||   |||||||||| |||| |||| ||| |||||||||| |||||||||||    
T  673 taattttaaaaaggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcaca 769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 455 - 537
Target Start/End: Original strand, 112656 - 112739
Alignment:
Q  455 gaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||||||||||| |||||  | |||| || ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  112656 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcaca 112739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 537
Target Start/End: Original strand, 11249 - 11335
Alignment:
Q  452 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 537  Q
    ||||||||||| |||||||||| |||||  ||||||| | |||||||| |||||  |||| ||| |||||||||| |||||||||||    
T  11249 aaggaaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggtaagttcatctcaca 11335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 533
Target Start/End: Complemental strand, 23521 - 23441
Alignment:
Q  454 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatct 533  Q
    ||||||||||| |||||||| |||||  | ||||||| |||||||| |||||| ||||  || |||||||||| |||||||    
T  23521 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatct 23441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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