View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15471_low_4 (Length: 396)
Name: NF15471_low_4
Description: NF15471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15471_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 4749784 - 4749421
Alignment:
| Q |
19 |
atcattaatatgataagaaagaattcacctatcgcatacctgtgaaagatatttcatttgcctaatttccgtatgtgtaattcctttttgatcggaaggc |
118 |
Q |
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| T |
4749784 |
atcattaatatgataagaaagaattcacctatcgcatacctgagaaagatatttcatttgcctaatttccgtatgtgtaagtcctttttgatcggaaggc |
4749685 |
T |
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| Q |
119 |
cttcttgccataatctcttcttgttctttctgaaagggttcatagttttgtttgttnnnnnnnnnn-cagtaacaaattttgaaaatgccacattaatta |
217 |
Q |
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| T |
4749684 |
cttcttgccataatctcttcttgttctttctgaaagggttcatagttttgtttgttaaaaaaaaaaacagtaacaaattttgaaaatgccacattaatta |
4749585 |
T |
|
| Q |
218 |
atagtattaaaaccttggctctttcgaagacatgtggatgattagtgaggttgataacggtccacaaaacaccataagcagagctttcatgaccagctaa |
317 |
Q |
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| T |
4749584 |
atagtattaaaaccttggctctttcgaagacatgtggatgattagtgaggttgataacggtccacaaaacaccataagcagagctttcatgaccagctaa |
4749485 |
T |
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| Q |
318 |
caagaacaaaagaagcaagtctataatgtcttcatcttccaacttctcaccctcgtcgtctctg |
381 |
Q |
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| T |
4749484 |
caagaacaaaagaagcaagtctataatgtcttcatcttccaacttctcaccctcgtcgtctctg |
4749421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 229 - 360
Target Start/End: Complemental strand, 4758054 - 4757923
Alignment:
| Q |
229 |
accttggctctttcgaagacatgtggatgattagtgaggttgataacggtccacaaaacaccataagcagagctttcatgaccagctaacaagaacaaaa |
328 |
Q |
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| T |
4758054 |
accttggccctttggaagacatgtggatgatcaatgaggtaaataatagtccacaaaattccatgagcagagctttcatgaccagctaacaagaacacaa |
4757955 |
T |
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| Q |
329 |
gaagcaagtctataatgtcttcatcttccaac |
360 |
Q |
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| T |
4757954 |
gaagcaagtctataatgtcttcatcctccaac |
4757923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 4758324 - 4758195
Alignment:
| Q |
25 |
aatatgataagaaagaattcacctatcgcatacctgtgaaagatatttcatttgcctaatttccgtatgtgtaattcctttttgatcggaaggccttctt |
124 |
Q |
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||||||| |||||||||||||| | || ||||||| ||||||||||| ||||||| |||||||| || | | | |||||||||| |||||||||| || |
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| T |
4758324 |
aatatgacaagaaagaattcacatttcacatacctttgaaagatattgcatttgcttaatttccttaaggttcagtcctttttgagtggaaggccttgtt |
4758225 |
T |
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| Q |
125 |
gccataatctcttcttgttctttctgaaag |
154 |
Q |
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|||| |||||||||||||||||||||||| |
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| T |
4758224 |
tccatgatctcttcttgttctttctgaaag |
4758195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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