View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15471_low_5 (Length: 395)
Name: NF15471_low_5
Description: NF15471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15471_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 385
Target Start/End: Original strand, 40728325 - 40728693
Alignment:
| Q |
17 |
acccccaagctttcacaaccaactttgtaaacaaaaattgtatcccaaaaaatgaaacattaagcttcaaaaatataagtgttgacaagccaattttccc |
116 |
Q |
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| T |
40728325 |
acccccaagctttcacaaccaactttgtaaacaaaaattgtatcccaaaaaatgaaacattaagcttcaaaaatataagtgttgacaaaccaattttccc |
40728424 |
T |
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| Q |
117 |
ctttatcaaattattactcttcatcatggccttaaatccataagagtcttctaaaacggtaacaacactagctaattgccaaattattgtaagatacaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40728425 |
ctttatcaaattattactcttcatcatggccttaaatccatatgagtcttctaaaacggtaacaacactagctaattgccaaattattgtaagatacaaa |
40728524 |
T |
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| Q |
217 |
atcccaacaaagtataagattccaataataactaaaattgcaacacccccactcttataattaattgaaagtgcccaaataatgaaaactagtattgcca |
316 |
Q |
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| T |
40728525 |
atcccaacaaagtataagattccaataataactaaaattgcaacacccccactcttataattaattgaaagtgcccaaataatgaaaactagtattgcca |
40728624 |
T |
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| Q |
317 |
aagtattatacacnnnnnnnnnnnnnnntgtgcataagaaagtgaccatgagtctcttccaaacctttg |
385 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40728625 |
aagtattatacacaaaaaatgcaaaaaatgtgcataagaaagtgaccatgagtctcttccaaacctttg |
40728693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 61
Target Start/End: Original strand, 40724280 - 40724310
Alignment:
| Q |
31 |
acaaccaactttgtaaacaaaaattgtatcc |
61 |
Q |
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| T |
40724280 |
acaaccaactttgtaaacaaaaattgtatcc |
40724310 |
T |
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