View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15471_low_6 (Length: 387)
Name: NF15471_low_6
Description: NF15471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15471_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 41 - 384
Target Start/End: Complemental strand, 13868175 - 13867832
Alignment:
| Q |
41 |
cataaacaacttgttcatcactgagacgttctacgctccaatcgctcatcataacgtcttctttcagctgcacccagaatccaagaattattttaacaat |
140 |
Q |
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| T |
13868175 |
cataaacaacttgttcatcactgagacgttctacgctccaatcgctcatcctaacgtcttctttcagccgcaccttgaatccaagagttattttaacaat |
13868076 |
T |
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| Q |
141 |
gtcatccacggagtaattcaacaaccgttcctgccacagtgtgagatcagcaggatttatgaacatctccaacgcgtgcttggacgacttcagatcttgt |
240 |
Q |
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| T |
13868075 |
gtcatccacggagtaattcaacaaccgttcccgccacagtgtgagatcagcaggatttatgaacatctccaaggcctgcttcgacgacttcagatcttgt |
13867976 |
T |
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| Q |
241 |
gaataatttaagtttttgaaccctgggaatccaatcctacgatccttcatgaaaacgcggagacaatccggtatggtagctgcatgagcgagctggaaaa |
340 |
Q |
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| T |
13867975 |
gaataatttaagtttttgaaccctgggaatccaatcctacgatccttcatgaaaacacggagacaatccggtgtggtagctgcatgagcgagctggaaac |
13867876 |
T |
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| Q |
341 |
tgaggcagcgatgaccaacacagaactgcaatgtgatgatgtcc |
384 |
Q |
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| T |
13867875 |
tgaggcagcgatgaccaacacagaactgcaacgtgtttatgtcc |
13867832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 46 - 375
Target Start/End: Original strand, 11876118 - 11876447
Alignment:
| Q |
46 |
acaacttgttcatcactgagacgttctacgctccaatcgctcatcataacgtcttctttcagctgcacccagaatccaagaattattttaacaatgtcat |
145 |
Q |
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| T |
11876118 |
acaacttgttcatcattgagattttcgacactccaatcgctcatcataacctcgtcttccagcttcaccctgaatccaagacaatttttaaccaactcat |
11876217 |
T |
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| Q |
146 |
ccacggagtaattcaacaaccgttcctgccacagtgtgagatcagcaggatttatgaacatctccaacgcgtgcttggacgacttcagatcttgtgaata |
245 |
Q |
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| T |
11876218 |
ccaccgtgtcatacatgtattgtccattccagcgcctgagatcagcaagacttatgtacatctccaacgcgtgcttcgacgacctcaaatcttgcaaata |
11876317 |
T |
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| Q |
246 |
atttaagtttttgaaccctgggaatccaatcctacgatccttcatgaaaacgcggagacaatccggtatggtagctgcatgagcgagctggaaaatgagg |
345 |
Q |
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| T |
11876318 |
agttttgttattgaaacctgggaatccaatcatacgatccttcatgaaatcacgaaaaatttgtggtatggtatctgcgcgagcgagctggaaaatgagg |
11876417 |
T |
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| Q |
346 |
cagcgatgaccaacacagaactgcaatgtg |
375 |
Q |
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| T |
11876418 |
cagcggtcagcaagggagaactgcaatgtg |
11876447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 367
Target Start/End: Complemental strand, 11885982 - 11885732
Alignment:
| Q |
117 |
gaatccaagaattattttaacaatgtcatccacggagtaattcaacaaccgttcctgccacagtgtgagatcagcaggatttatgaacatctccaacgcg |
216 |
Q |
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| T |
11885982 |
gaatccaagacattttttaactatcttatccaccgagtcattcaagaaccattgctcccaccgtgagagaacaacaagatccatgtacatctccaatgtg |
11885883 |
T |
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| Q |
217 |
tgcttggacgacttcagatcttgtgaataatttaagtttttgaaccctgggaatccaatcctacgatccttcatgaaaacgcggagacaatccggtatgg |
316 |
Q |
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| T |
11885882 |
tgcttcgaccaattcaaatattgtgaatacgttaggttcttcaaccctgggaatccaatcaaacgatcctttatgaactcacggatacaagtcggtatgg |
11885783 |
T |
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| Q |
317 |
tagctgcatgagcgagctggaaaatgaggcagcgatgaccaacacagaact |
367 |
Q |
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| T |
11885782 |
tatttgtgcgattgagctggaaaatgttgcaatgatcaccaacacagaact |
11885732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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