View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15471_low_9 (Length: 353)
Name: NF15471_low_9
Description: NF15471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15471_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 347
Target Start/End: Original strand, 1903117 - 1903450
Alignment:
| Q |
17 |
aaaaattaaagtccataaagtatatgaatattgacacagtcacgaacaccagatataacactgacactaggacatagacgccaatattaatttgatgaaa |
116 |
Q |
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| T |
1903117 |
aaaaattaaagtccataaagtatatgaatattgacacagtcacgaacaccatatataacactgacactaggacatagacatcaataataatttgatgaaa |
1903216 |
T |
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| Q |
117 |
tggaaaagattggatgtaacacgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaacacgccttcaatgtgaagtat |
216 |
Q |
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| T |
1903217 |
tggaaaagattggatgtaacatgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaacacgccttcaatgtgaagta- |
1903315 |
T |
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| Q |
217 |
cggtcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaatgaaatattttttca-------ttatttaatgagatcatcaaaatt |
309 |
Q |
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| T |
1903316 |
---tcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaatgaaatattttttcatttcttgttatttaatgagatcatcaaaatt |
1903412 |
T |
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| Q |
310 |
ttagtactgaaaagtttaagttcgtttattcatctcac |
347 |
Q |
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| T |
1903413 |
ttagtactgaaaagtttcagttcctttattcatttcac |
1903450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 347
Target Start/End: Original strand, 1907350 - 1907683
Alignment:
| Q |
17 |
aaaaattaaagtccataaagtatatgaatattgacacagtcacgaacaccagatataacactgacactaggacatagacgccaatattaatttgatgaaa |
116 |
Q |
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| T |
1907350 |
aaaaattaaagtccataaagtatatgaatattgacacagtcacgaacaccatatataacactgacactaggacatagacatcaataataatttgatgaaa |
1907449 |
T |
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| Q |
117 |
tggaaaagattggatgtaacacgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaacacgccttcaatgtgaagtat |
216 |
Q |
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| T |
1907450 |
tggaaaagattggatgtaacatgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaacacgccttcaatgtgaagta- |
1907548 |
T |
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| Q |
217 |
cggtcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaatgaaatattttttca-------ttatttaatgagatcatcaaaatt |
309 |
Q |
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| T |
1907549 |
---tcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaatgaaatattttttcatttcttgttatttaatgagatcatcaaaatt |
1907645 |
T |
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| Q |
310 |
ttagtactgaaaagtttaagttcgtttattcatctcac |
347 |
Q |
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| T |
1907646 |
ttagtactgaaaagtttcagttcctttattcatttcac |
1907683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 248
Target Start/End: Original strand, 1897876 - 1898006
Alignment:
| Q |
114 |
aaatggaaaagattggatgtaacacgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaacacgccttcaatgtgaag |
213 |
Q |
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||||||||| ||||| || ||||| ||||||||||||| ||||||||||||||||| ||| || | ||||| |||||||||||| |||||| ||||| |
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| T |
1897876 |
aaatggaaatgattgaatttaacatgcatgtctatgtccgacaccagcacgtgccagacatcgatacatgttggacactgaacacgttttcaatatgaag |
1897975 |
T |
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| Q |
214 |
tatcggtcggtgctgcatagtatttactagaatgt |
248 |
Q |
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| T |
1897976 |
ta----tcagtgctacatagtatttactagaatgt |
1898006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 286 - 347
Target Start/End: Original strand, 1898089 - 1898150
Alignment:
| Q |
286 |
ttatttaatgagatcatcaaaattttagtactgaaaagtttaagttcgtttattcatctcac |
347 |
Q |
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| T |
1898089 |
ttatttaatgggatcatcaaaattttagtactgaaaagtttcagttcctttattcatttcac |
1898150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 1897627 - 1897676
Alignment:
| Q |
46 |
attgacacagtcacgaacaccagatataacactgacactaggacatagac |
95 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||| || ||||| |
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| T |
1897627 |
attgacacagtcacgaacaccagacataatactgacactagcacgtagac |
1897676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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