View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15472_high_1 (Length: 492)
Name: NF15472_high_1
Description: NF15472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15472_high_1 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0047 (1 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 12 - 492
Target Start/End: Complemental strand, 42125901 - 42125426
Alignment:
| Q |
12 |
agaatatagattagagttggtcggataattacagatgggacaatccagtctcatcctaatttttcttaacccagatgagacattctatttgtgttnnnnn |
111 |
Q |
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| T |
42125901 |
agaatatagattagaattgatcggataattacagatgggacaatccagtctcatcctaatttttcttaactcagatgagacattctatttgtgttaaata |
42125802 |
T |
|
| Q |
112 |
nnnnnnnnnnngtattttttatattataaaaatgccgtattcatagagtatacaattcatggtttaagcggaacttccttnnnnnnnn-tggtttaagcg |
210 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42125801 |
aaaaaataaaaaaatt----atattataaaaatgccgtattcatagagtatacaattcatggtttaagcggaacttccttaaaaaaaaatggtttaagcg |
42125706 |
T |
|
| Q |
211 |
taactaattaaaacctagattactaaaatatatacatgattataggatatagatagaagtgatatatcttgtcttcttgcaaacttaacttcaatatgcg |
310 |
Q |
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| T |
42125705 |
gaactaattaaaacctagattactaaa-tatatacatgattatag-atatagatagaagtgatatatcttgtcttcttgcaaacttaacttcaatatgcg |
42125608 |
T |
|
| Q |
311 |
tgtaataagaattaagaaataaaatcatatccatataagagaataaactgaagaagcaatcattgttttgcttctaacatgaagaaatttaaattatgta |
410 |
Q |
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| T |
42125607 |
tgtaataagaattaagaaataaaatcatatccatataagagaataaactgaagaagcaatcattgttttgcttctaacatgaagaaatttaaattatgta |
42125508 |
T |
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| Q |
411 |
agtttactacaaagaatatgttagtaaaaaatgtagaaattataccacttatcttgttgacattgctgtactacttgaatat |
492 |
Q |
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| T |
42125507 |
agtttactacaaagaatatgttagtaaaaaatgtagaaattataccacttatcttgttgacattgctgtactacttgaatat |
42125426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 368 - 492
Target Start/End: Original strand, 25124 - 25257
Alignment:
| Q |
368 |
aatcattgttttgcttc-taacatgaagaaatttaaattatgtaagtttactacaaaga--------atatgttagtaaaaaatgtagaaattataccac |
458 |
Q |
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|||||||||||| |||| ||||| |||||||||||| ||| ||||||||||||||||| ||||| | |||||||||||||||| | | ||| |
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| T |
25124 |
aatcattgttttacttcctaacacgaagaaatttaagttacataagtttactacaaagatcaaataaatatggtggtaaaaaatgtagaaaatgcagcac |
25223 |
T |
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| Q |
459 |
ttatcttgttgacattgctgtactacttgaatat |
492 |
Q |
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| T |
25224 |
ttatcttattgacattgctgcacaacttgaatat |
25257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 368 - 492
Target Start/End: Complemental strand, 11396 - 11263
Alignment:
| Q |
368 |
aatcattgttttgcttc-taacatgaagaaatttaaattatgtaagtttactacaaaga--------atatgttagtaaaaaatgtagaaattataccac |
458 |
Q |
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|||||||||||| |||| ||||| |||||||||||| ||| ||||||||||||||||| ||||| | |||||||||||||||| | | ||| |
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| T |
11396 |
aatcattgttttacttcctaacacgaagaaatttaagttacataagtttactacaaagatcaaataaatatggtggtaaaaaatgtagaaaatgcagcac |
11297 |
T |
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| Q |
459 |
ttatcttgttgacattgctgtactacttgaatat |
492 |
Q |
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| T |
11296 |
ttatcttattgacattgctgcacaacttgaatat |
11263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 368 - 492
Target Start/End: Original strand, 14828313 - 14828446
Alignment:
| Q |
368 |
aatcattgttttgcttc-taacatgaagaaatttaaattatgtaagtttactacaaaga--------atatgttagtaaaaaatgtagaaattataccac |
458 |
Q |
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|||||||||||| |||| ||||| |||||||||||| ||| ||||||||||||||||| ||||| | |||||||||||||||| | | ||| |
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| T |
14828313 |
aatcattgttttacttcctaacacgaagaaatttaagttacataagtttactacaaagatcaaataaatatggtggtaaaaaatgtagaaaatgcagcac |
14828412 |
T |
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| Q |
459 |
ttatcttgttgacattgctgtactacttgaatat |
492 |
Q |
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||||||| |||||||||||| || |||||||||| |
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| T |
14828413 |
ttatcttattgacattgctgcacaacttgaatat |
14828446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 10172667 - 10172708
Alignment:
| Q |
317 |
aagaattaagaaataaaatcatatccatataagagaataaac |
358 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10172667 |
aagaattaagaaataacatcatatccatataagagaataaac |
10172708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 437 - 492
Target Start/End: Complemental strand, 348701 - 348646
Alignment:
| Q |
437 |
aaaaatgtagaaattataccacttatcttgttgacattgctgtactacttgaatat |
492 |
Q |
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||||||||||||| | |||||||||||||||||||||||||| | |||||||||| |
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| T |
348701 |
aaaaatgtagaaaatgtaccacttatcttgttgacattgctgcagaacttgaatat |
348646 |
T |
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