View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15472_high_2 (Length: 475)
Name: NF15472_high_2
Description: NF15472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15472_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 6e-75; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 173 - 335
Target Start/End: Complemental strand, 42125969 - 42125807
Alignment:
| Q |
173 |
gttaatttgaatgaagataatatttgaggaacatataaagtaataaaaacatacttatgttatcacggagaatatagattagagttggtcggataattac |
272 |
Q |
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| T |
42125969 |
gttaatttgaatgaagataatatttgaggaacatataaagtaataaaaatatacttatgctatcacggagaatatagattagaattgatcggataattac |
42125870 |
T |
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| Q |
273 |
agatgggacaatccagtctcatcctaatttttcttaacccagatgagacattctatttgtgtt |
335 |
Q |
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| T |
42125869 |
agatgggacaatccagtctcatcctaatttttcttaactcagatgagacattctatttgtgtt |
42125807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 42126138 - 42126019
Alignment:
| Q |
1 |
aagaaaattgcaccttaaaatacatgtatgtatgtatgaagaggttttttagagtgccacatgggcacaatctaagcataaggttaactcaagtttaaaa |
100 |
Q |
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| T |
42126138 |
aagaaaattgcaccttaaaatacatgtatgtatg----aagaggttttttagagtgccacataggcacaatctaagcataaggttaactcaagtttaaaa |
42126043 |
T |
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| Q |
101 |
gtcaacatagtattctaattttaa |
124 |
Q |
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| T |
42126042 |
gtcaacatagtattctaattttaa |
42126019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 371 - 465
Target Start/End: Original strand, 42125807 - 42125901
Alignment:
| Q |
371 |
aacacaaatagaatgtctcatctgggttaagaaaaattaggatgagactggattgtcccatctgtaattatccgaccaactctaatctatattct |
465 |
Q |
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| T |
42125807 |
aacacaaatagaatgtctcatctgagttaagaaaaattaggatgagactggattgtcccatctgtaattatccgatcaattctaatctatattct |
42125901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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