View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15472_high_4 (Length: 362)
Name: NF15472_high_4
Description: NF15472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15472_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 38180704 - 38180375
Alignment:
| Q |
1 |
acatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180704 |
acatacccactacacggtcacataaaccctgctctccaattcgccaaacgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttac |
38180605 |
T |
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| Q |
101 |
acactcgccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacgaagactt |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180604 |
acactcgccttaccaacaaatcaaccatctcgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacgaagactt |
38180505 |
T |
|
| Q |
201 |
tgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgcttagcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180504 |
tgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgcttagcc |
38180405 |
T |
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| Q |
301 |
tacggtatcatcattccttgggtcgcaaag |
330 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
38180404 |
tacggtatcatcattccttgggtcgcaaag |
38180375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 38185373 - 38185044
Alignment:
| Q |
1 |
acatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttac |
100 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
38185373 |
acatacccactacacggtcacataaaccctgcactccaattcgccaagcgtctcatttctttcggcgcacaagtcacttttgctacaactatctacttac |
38185274 |
T |
|
| Q |
101 |
acactcgccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacgaagactt |
200 |
Q |
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||||| |||||| ||||||| |||||||||| ||||| |||||||||||||||||||| ||| ||||||| || ||| |||||||||||||||||||| |
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| T |
38185273 |
acactggccttatcaacaaaccaaccatcccaggcctctccttcgccaccttctctgatggctacgacgacggtaaaaatttcgaaagcaacgaagactt |
38185174 |
T |
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| Q |
201 |
tgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgcttagcc |
300 |
Q |
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|| ||||| || ||||||||| ||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38185173 |
catcgcctacaggtccgagcttaagtgccactgctcagaatttctaacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgcttagcc |
38185074 |
T |
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| Q |
301 |
tacggtatcatcattccttgggtcgcaaag |
330 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
38185073 |
tacggtatcatcattccttgggtcgcaaag |
38185044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 38170890 - 38170594
Alignment:
| Q |
1 |
acatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttac |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
38170890 |
acatacccactacaaggtcacataaaccctgccctccaattcaccaagcgtctcatttctttgggcgcaaaagtcacttttgctaccactatccacttat |
38170791 |
T |
|
| Q |
101 |
acactcgccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacgaagactt |
200 |
Q |
| |
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||| |||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||| | ||||| || | ||||| | || |||||||| | |
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| T |
38170790 |
acagtcgccttatcaacaaaccaaccatcccgggcctctccttcgccaccttctctgacggctatgacgacggtcaaaaatcctttggcgacgaagacat |
38170691 |
T |
|
| Q |
201 |
tgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgctta |
297 |
Q |
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||| ||||| || |||| ||| ||| ||| |||| |||||||||||||||||||| |||||| |||||| ||| || |||||||||||||||| |
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| T |
38170690 |
cgtctcctacatgtctgagtttacgcgtcgcggctcagaatttctcacaaatatcattctctcctccaaacaagaaaatcatccattcacttgctta |
38170594 |
T |
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