View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15472_high_7 (Length: 334)

Name: NF15472_high_7
Description: NF15472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15472_high_7
NF15472_high_7
[»] chr7 (15 HSPs)
chr7 (1-320)||(45056660-45056979)
chr7 (266-299)||(12289116-12289149)
chr7 (266-315)||(32308106-32308155)
chr7 (215-263)||(40287307-40287355)
chr7 (266-320)||(2424598-2424649)
chr7 (266-300)||(19206051-19206085)
chr7 (266-300)||(29787393-29787427)
chr7 (266-315)||(11722122-11722171)
chr7 (266-315)||(30813798-30813847)
chr7 (268-296)||(3721098-3721126)
chr7 (215-263)||(7438783-7438831)
chr7 (215-263)||(9778571-9778619)
chr7 (268-300)||(16341497-16341529)
chr7 (272-312)||(20545266-20545306)
chr7 (266-314)||(20549778-20549826)
[»] chr8 (24 HSPs)
chr8 (268-323)||(13844622-13844677)
chr8 (266-312)||(31236601-31236647)
chr8 (264-309)||(27213539-27213584)
chr8 (268-300)||(14731713-14731745)
chr8 (113-168)||(2317926-2317981)
chr8 (268-319)||(20785491-20785542)
chr8 (215-262)||(29358042-29358089)
chr8 (216-263)||(33405330-33405377)
chr8 (268-315)||(39954305-39954352)
chr8 (266-296)||(3025556-3025586)
chr8 (266-300)||(12606853-12606887)
chr8 (266-316)||(14134684-14134734)
chr8 (266-300)||(18067958-18067992)
chr8 (266-300)||(29776037-29776071)
chr8 (266-300)||(34897086-34897120)
chr8 (266-300)||(40332192-40332226)
chr8 (115-160)||(10107357-10107402)
chr8 (266-315)||(13436988-13437037)
chr8 (266-315)||(22651962-22652011)
chr8 (266-315)||(24362226-24362275)
chr8 (266-315)||(30077411-30077460)
chr8 (275-315)||(12124094-12124134)
chr8 (215-263)||(14639735-14639783)
chr8 (266-294)||(29447134-29447162)
[»] chr2 (17 HSPs)
chr2 (266-315)||(27084248-27084297)
chr2 (266-309)||(18420458-18420501)
chr2 (266-315)||(21616748-21616797)
chr2 (266-314)||(21782842-21782890)
chr2 (266-322)||(44860301-44860355)
chr2 (269-300)||(31284049-31284080)
chr2 (266-300)||(37411268-37411302)
chr2 (266-315)||(23718012-23718061)
chr2 (266-315)||(24105684-24105733)
chr2 (266-303)||(35449511-35449548)
chr2 (271-320)||(38117188-38117237)
chr2 (266-314)||(896198-896246)
chr2 (215-263)||(2438664-2438712)
chr2 (115-171)||(4860242-4860298)
chr2 (266-322)||(18889615-18889670)
chr2 (215-263)||(26769588-26769636)
chr2 (215-263)||(42511327-42511375)
[»] chr6 (25 HSPs)
chr6 (266-315)||(7265617-7265666)
chr6 (266-315)||(30866168-30866217)
chr6 (266-314)||(26562676-26562724)
chr6 (266-308)||(43709-43751)
chr6 (266-320)||(2117057-2117111)
chr6 (266-300)||(9025518-9025552)
chr6 (266-320)||(19602205-19602259)
chr6 (215-263)||(32978844-32978892)
chr6 (268-299)||(7086797-7086828)
chr6 (268-299)||(8805598-8805629)
chr6 (268-315)||(10842518-10842565)
chr6 (266-309)||(19040344-19040387)
chr6 (266-309)||(32299267-32299310)
chr6 (266-320)||(7377960-7378014)
chr6 (266-300)||(7723274-7723308)
chr6 (266-300)||(7996402-7996436)
chr6 (266-300)||(8022365-8022399)
chr6 (266-315)||(9658865-9658914)
chr6 (266-315)||(10770698-10770747)
chr6 (269-302)||(13632025-13632058)
chr6 (266-315)||(16766683-16766732)
chr6 (266-303)||(31579249-31579286)
chr6 (268-309)||(33001315-33001356)
chr6 (267-315)||(9027164-9027212)
chr6 (215-263)||(10339059-10339107)
[»] chr1 (29 HSPs)
chr1 (266-315)||(6427336-6427385)
chr1 (266-314)||(1262871-1262919)
chr1 (266-312)||(12443484-12443530)
chr1 (270-320)||(38075998-38076048)
chr1 (266-300)||(40181872-40181906)
chr1 (266-315)||(2896145-2896194)
chr1 (266-323)||(25098579-25098636)
chr1 (266-303)||(25452172-25452209)
chr1 (266-315)||(36878447-36878496)
chr1 (266-315)||(36905983-36906032)
chr1 (266-315)||(40285678-40285727)
chr1 (266-317)||(17831555-17831606)
chr1 (278-320)||(3490426-3490468)
chr1 (267-322)||(9709793-9709854)
chr1 (266-320)||(10233234-10233288)
chr1 (266-320)||(10475001-10475055)
chr1 (266-300)||(19324563-19324597)
chr1 (266-300)||(31015044-31015078)
chr1 (266-315)||(398789-398838)
chr1 (266-315)||(13436444-13436493)
chr1 (270-315)||(19909283-19909328)
chr1 (266-315)||(23531802-23531851)
chr1 (266-319)||(24577210-24577263)
chr1 (266-294)||(7918235-7918263)
chr1 (215-263)||(18337395-18337443)
chr1 (266-314)||(19562645-19562693)
chr1 (268-320)||(22881642-22881694)
chr1 (272-300)||(29229462-29229490)
chr1 (266-294)||(34298443-34298471)
[»] chr5 (20 HSPs)
chr5 (269-315)||(17123034-17123080)
chr5 (266-320)||(31084304-31084358)
chr5 (267-300)||(26716145-26716178)
chr5 (267-300)||(26985885-26985918)
chr5 (215-263)||(30502333-30502381)
chr5 (215-263)||(30542676-30542724)
chr5 (266-320)||(6471913-6471965)
chr5 (268-315)||(39205866-39205913)
chr5 (266-300)||(22423836-22423870)
chr5 (266-300)||(41091281-41091315)
chr5 (269-315)||(42893346-42893392)
chr5 (267-320)||(2436903-2436956)
chr5 (115-160)||(5003978-5004023)
chr5 (266-303)||(21576769-21576806)
chr5 (218-263)||(31084394-31084439)
chr5 (268-323)||(14674246-14674302)
chr5 (268-300)||(16203821-16203853)
chr5 (268-300)||(19579702-19579734)
chr5 (275-315)||(19820427-19820467)
chr5 (266-322)||(22611761-22611817)
[»] chr3 (16 HSPs)
chr3 (266-300)||(9624642-9624676)
chr3 (266-320)||(40052313-40052367)
chr3 (268-300)||(11313826-11313858)
chr3 (268-300)||(27277864-27277896)
chr3 (215-258)||(1389909-1389952)
chr3 (266-301)||(45451553-45451588)
chr3 (266-320)||(1438785-1438839)
chr3 (266-296)||(11251983-11252013)
chr3 (266-308)||(13807162-13807204)
chr3 (266-320)||(21479099-21479153)
chr3 (267-320)||(8789575-8789628)
chr3 (266-314)||(4987315-4987363)
chr3 (269-309)||(12674528-12674568)
chr3 (215-263)||(27505317-27505365)
chr3 (215-263)||(28918069-28918117)
chr3 (264-300)||(49651808-49651844)
[»] scaffold0020 (1 HSPs)
scaffold0020 (267-300)||(135337-135370)
[»] chr4 (24 HSPs)
chr4 (266-315)||(36635310-36635359)
chr4 (267-303)||(15659785-15659821)
chr4 (266-320)||(21873395-21873447)
chr4 (266-320)||(21929256-21929308)
chr4 (115-162)||(24235587-24235634)
chr4 (268-319)||(50280863-50280914)
chr4 (266-300)||(8423742-8423776)
chr4 (266-320)||(15029746-15029800)
chr4 (266-315)||(29205432-29205479)
chr4 (268-314)||(33950123-33950169)
chr4 (266-300)||(56257934-56257968)
chr4 (268-313)||(7214548-7214592)
chr4 (266-315)||(14465099-14465148)
chr4 (266-303)||(16189707-16189744)
chr4 (266-303)||(17425413-17425450)
chr4 (266-295)||(34200295-34200324)
chr4 (215-263)||(715550-715598)
chr4 (215-263)||(752876-752924)
chr4 (263-295)||(847957-847989)
chr4 (269-317)||(1074782-1074830)
chr4 (266-298)||(12077831-12077863)
chr4 (266-294)||(24613725-24613753)
chr4 (215-263)||(28084590-28084638)
chr4 (215-263)||(29205534-29205582)
[»] scaffold0008 (1 HSPs)
scaffold0008 (266-302)||(263396-263432)
[»] scaffold0306 (1 HSPs)
scaffold0306 (266-315)||(13386-13435)
[»] scaffold0152 (1 HSPs)
scaffold0152 (266-315)||(21892-21941)
[»] scaffold0103 (1 HSPs)
scaffold0103 (266-315)||(51797-51846)
[»] scaffold0004 (2 HSPs)
scaffold0004 (266-315)||(92793-92842)
scaffold0004 (215-263)||(92888-92936)
[»] scaffold0793 (1 HSPs)
scaffold0793 (215-263)||(4826-4874)
[»] scaffold0380 (1 HSPs)
scaffold0380 (215-263)||(8667-8715)
[»] scaffold0123 (1 HSPs)
scaffold0123 (266-322)||(44549-44605)
[»] scaffold0085 (1 HSPs)
scaffold0085 (266-294)||(26400-26428)


Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 45056660 - 45056979
Alignment:
Q  1 aaatttgcactcaattttaatcccttgatagaatattctatctcgtcactattataaaataaaagttcccttttcagaatgtatctagtttataacaata 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45056660 aaatttgcactcaattttaatcccttgatagaatactctatctcgtcactattataaaataaaagttcccttttcagaatgtatctagtttataacaata 45056759  T
Q  101 tagatggataagatatacatcagctattcaataaaactgaaaaaataatttttgcttataatggtgactgggggagtacatcaaaatgaccaacattgac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  45056760 tagatggataagatatacatcagctattcaataaaactgaaaaaataatttttgcttataatggtgaccgggggagtacatcaaaatgaccaacattgac 45056859  T
Q  201 attatcaatcaattaagcacggacactccttggattagccatgtccaagtgtcggacatgtgtagtgaattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  45056860 attatcaatcaattaagcacggacactccttggattagccatgtccaagtgttggacatgtgtagtgaattatgtgattttctcaaattattagcagtgt 45056959  T
Q  301 tggagtgtccgtgtcgtgtc 320  Q
    ||||||||||||||||||||    
T  45056960 tggagtgtccgtgtcgtgtc 45056979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 299
Target Start/End: Complemental strand, 12289149 - 12289116
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtg 299  Q
    ||||||||||||||||||||||||||||||||||    
T  12289149 tgaattatgtgattttctcaaattattagcagtg 12289116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 32308155 - 32308106
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||||||||||||||||| |||| || ||||| |||||    
T  32308155 tgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 32308106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 40287307 - 40287355
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    |||||||||||||||| ||||||| |||||||  |||||||||||||||    
T  40287307 aagcacggacactcctcggattaggcatgtcccggtgtcggacatgtgt 40287355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 320
Target Start/End: Complemental strand, 2424649 - 2424598
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtc 320  Q
    |||||||||||||||||||||||||||||| |||||  |||||| ||||||||||    
T  2424649 tgaattatgtgattttctcaaattattagc-gtgtt--agtgtctgtgtcgtgtc 2424598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 300
Target Start/End: Complemental strand, 19206085 - 19206051
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||||||||||||||||||||||||| ||||    
T  19206085 tgaattatgtgattttctcaaattattagcggtgt 19206051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 29787393 - 29787427
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||||||||||||||||||||||||| ||||    
T  29787393 tgaattatgtgattttctcaaattattagcggtgt 29787427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 11722122 - 11722171
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||||||||||| ||||| |||| || ||||| |||||    
T  11722122 tgaattatgtgattttctcaaattgttagcggtgtcggcgtgtcagtgtc 11722171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 30813847 - 30813798
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||| |||||||||||||||||||| ||| ||||| || |||||    
T  30813847 tgaattatgtaattttctcaaattattagcaatgtcggagtatcagtgtc 30813798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 296
Target Start/End: Complemental strand, 3721126 - 3721098
Alignment:
Q  268 aattatgtgattttctcaaattattagca 296  Q
    |||||||||||||||||||||||||||||    
T  3721126 aattatgtgattttctcaaattattagca 3721098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 7438831 - 7438783
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    |||||||||||||||||| ||||| | ||||| ||||||| ||||||||    
T  7438831 aagcacggacactccttgaattaggcgtgtcctagtgtcgcacatgtgt 7438783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 9778619 - 9778571
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    |||||||||||||||||||||||| | |||||  |||||||||| ||||    
T  9778619 aagcacggacactccttggattaggcgtgtcccggtgtcggacacgtgt 9778571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 16341529 - 16341497
Alignment:
Q  268 aattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||||||||||||||||||||| ||||||    
T  16341529 aattatgtgattttctcaaattattatcagtgt 16341497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 20545266 - 20545306
Alignment:
Q  272 atgtgattttctcaaattattagcagtgttggagtgtccgt 312  Q
    |||||||||| ||||||||||||| ||||||| ||||||||    
T  20545266 atgtgattttttcaaattattagcggtgttggcgtgtccgt 20545306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 20549826 - 20549778
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgt 314  Q
    ||||||| |||||||||||||||||||||| |||| || ||||| ||||    
T  20549826 tgaattacgtgattttctcaaattattagcggtgtcggtgtgtcagtgt 20549778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 13844622 - 13844677
Alignment:
Q  268 aattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtctgt 323  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  13844622 aattatgtgattttctcaaattattagcagtgtcggcgtgtccgtgtcgtgtctgt 13844677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 31236601 - 31236647
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgt 312  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||    
T  31236601 tgaattatgtgattttctcaaattattagcagtgtcggcgtgtccgt 31236647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 309
Target Start/End: Complemental strand, 27213584 - 27213539
Alignment:
Q  264 agtgaattatgtgattttctcaaattattagcagtgttggagtgtc 309  Q
    |||||||||||||||||||| |||||||||||||||| || |||||    
T  27213584 agtgaattatgtgattttctgaaattattagcagtgtcggcgtgtc 27213539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 14731745 - 14731713
Alignment:
Q  268 aattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||||||||||||||||||||||||||||    
T  14731745 aattatgtgattttctcaaattattagcagtgt 14731713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 2317981 - 2317926
Alignment:
Q  113 atatacatcagctattcaataaaactgaaaaaataatttttgcttataatggtgac 168  Q
    ||||||||||| |||||||| || ||||||||||||| |||||||| ||| |||||    
T  2317981 atatacatcagttattcaatgaatctgaaaaaataatatttgcttaaaattgtgac 2317926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 319
Target Start/End: Original strand, 20785491 - 20785542
Alignment:
Q  268 aattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgt 319  Q
    ||||||||||||| |||||||||||||| |||||||  | ||||||||||||    
T  20785491 aattatgtgatttcctcaaattattagcggtgttggcatatccgtgtcgtgt 20785542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 29358089 - 29358042
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggacatgtg 262  Q
    |||||||||||||||||  ||||||||||||  |||||||||||||||    
T  29358089 aagcacggacactccttcaattagccatgtctcagtgtcggacatgtg 29358042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 33405330 - 33405377
Alignment:
Q  216 agcacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    ||||||||||||| ||||||||||| |||||| ||||| |||||||||    
T  33405330 agcacggacactcattggattagccgtgtccaggtgtcagacatgtgt 33405377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 315
Target Start/End: Original strand, 39954305 - 39954352
Alignment:
Q  268 aattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||||||||||||||| |||| || ||||| |||||    
T  39954305 aattatgtgattttctcaaattattagcggtgtcggcgtgtcggtgtc 39954352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 296
Target Start/End: Complemental strand, 3025586 - 3025556
Alignment:
Q  266 tgaattatgtgattttctcaaattattagca 296  Q
    |||||||||||||||||||||||||||||||    
T  3025586 tgaattatgtgattttctcaaattattagca 3025556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 12606853 - 12606887
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||| ||||||||||||||||||||||||||    
T  12606853 tgaattatatgattttctcaaattattagcagtgt 12606887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 14134734 - 14134684
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcg 316  Q
    ||||||||||||||||||||||||||||| | ||| |  ||||||||||||    
T  14134734 tgaattatgtgattttctcaaattattagtattgtcgacgtgtccgtgtcg 14134684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 18067958 - 18067992
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||||||||||||||||||||||||| ||||    
T  18067958 tgaattatgtgattttctcaaattattagcggtgt 18067992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 300
Target Start/End: Complemental strand, 29776071 - 29776037
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgt 300  Q
    ||||||| |||||||||||||||||||||||||||    
T  29776071 tgaattacgtgattttctcaaattattagcagtgt 29776037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 300
Target Start/End: Complemental strand, 34897120 - 34897086
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||||||||||||||||||||||||| ||||    
T  34897120 tgaattatgtgattttctcaaattattagcggtgt 34897086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 300
Target Start/End: Complemental strand, 40332226 - 40332192
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgt 300  Q
    ||||||||||||||||||||||||||| |||||||    
T  40332226 tgaattatgtgattttctcaaattatttgcagtgt 40332192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 10107357 - 10107402
Alignment:
Q  115 atacatcagctattcaataaaactgaaaaaataatttttgcttata 160  Q
    ||||||||| |||||||| |||||||||||| ||| ||||||||||    
T  10107357 atacatcagttattcaatgaaactgaaaaaagaatatttgcttata 10107402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 13436988 - 13437037
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||| ||||||||||||| |||| || ||||| |||||    
T  13436988 tgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 13437037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 22652011 - 22651962
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||| ||||||||||||| |||| || ||||| |||||    
T  22652011 tgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 22651962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 24362226 - 24362275
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||| ||||||||||||||| |||| || ||||| |||||    
T  24362226 tgaattatgtgattctctcaaattattagcggtgtcggcgtgtcggtgtc 24362275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 30077411 - 30077460
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    ||||||||||||| || ||||||||||||| | ||||| |||||||||||    
T  30077411 tgaattatgtgatgttttcaaattattagctgcgttggcgtgtccgtgtc 30077460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 12124134 - 12124094
Alignment:
Q  275 tgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    ||||||||||||||||||||| |||||||  ||||||||||    
T  12124134 tgattttctcaaattattagcggtgttggcttgtccgtgtc 12124094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 14639735 - 14639783
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    |||||| || |||||||||||||| |||||||  |||||||||||||||    
T  14639735 aagcacagatactccttggattaggcatgtcccggtgtcggacatgtgt 14639783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 294
Target Start/End: Original strand, 29447134 - 29447162
Alignment:
Q  266 tgaattatgtgattttctcaaattattag 294  Q
    |||||||||||||||||||||||||||||    
T  29447134 tgaattatgtgattttctcaaattattag 29447162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 27084297 - 27084248
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  27084297 tgaattatatgattttctcaaattattagcagtgtcggagtgtccgtgtc 27084248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 18420458 - 18420501
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtc 309  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  18420458 tgaattatgtgattttctcaaattattagcagtgttggcgtgtc 18420501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 21616797 - 21616748
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||||||||||||||||| |||| || |||||||||||    
T  21616797 tgaattatgtgattttctcaaattattagcggtgtcggcgtgtccgtgtc 21616748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 21782842 - 21782890
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgt 314  Q
    ||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  21782842 tgaattatgtgattttctcaaattattagcagtgtcggcgtgtcagtgt 21782890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 44860355 - 44860301
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtctg 322  Q
    ||||||||| |||||||||||||||||||| ||||   |||||||||||||||||||    
T  44860355 tgaattatgcgattttctcaaattattagcggtgt--cagtgtccgtgtcgtgtctg 44860301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 300
Target Start/End: Complemental strand, 31284080 - 31284049
Alignment:
Q  269 attatgtgattttctcaaattattagcagtgt 300  Q
    ||||||||||||||||||||||||||||||||    
T  31284080 attatgtgattttctcaaattattagcagtgt 31284049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 37411268 - 37411302
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||||||||||||||||||||||||| ||||    
T  37411268 tgaattatgtgattttctcaaattattagcggtgt 37411302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 23718061 - 23718012
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||| ||||||||||||||||| |||| || ||||| |||||    
T  23718061 tgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtc 23718012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 24105733 - 24105684
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||| ||||||||||||||||| |||| || ||||| |||||    
T  24105733 tgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtc 24105684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 303
Target Start/End: Complemental strand, 35449548 - 35449511
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttgg 303  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  35449548 tgaattctgtgattttctcaaattattaacagtgttgg 35449511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 320
Target Start/End: Original strand, 38117188 - 38117237
Alignment:
Q  271 tatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtc 320  Q
    ||||||||||| ||||||||||||| |||| || ||||| ||||||||||    
T  38117188 tatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 38117237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 896246 - 896198
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgt 314  Q
    |||| ||||||||||||||||| |||||||||||| || ||||| ||||    
T  896246 tgaaatatgtgattttctcaaactattagcagtgtcggcgtgtcagtgt 896198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 2438664 - 2438712
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    |||||||||||||||| ||||||| | |||||  |||||||||||||||    
T  2438664 aagcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgt 2438712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 4860298 - 4860242
Alignment:
Q  115 atacatcagctattcaataaaactgaaaaaataatttttgcttataatggtgactgg 171  Q
    ||||||||| |||||||| || |||||||  ||| ||||||||||||| ||||||||    
T  4860298 atacatcagttattcaatgaatctgaaaatgtaaattttgcttataatagtgactgg 4860242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 18889615 - 18889670
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtctg 322  Q
    ||||||||||||||||||||| |||||||| | | | | ||||||||||||||||||    
T  18889615 tgaattatgtgattttctcaatttattagcggcg-tcgcgtgtccgtgtcgtgtctg 18889670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 26769636 - 26769588
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    |||||||||||||||| ||||||| | ||||| ||||||||||| ||||    
T  26769636 aagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgt 26769588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 42511327 - 42511375
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    |||||||||||||||| ||||||||| |||||  |||||||||| ||||    
T  42511327 aagcacggacactcctcggattagccgtgtccctgtgtcggacacgtgt 42511375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 7265617 - 7265666
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  7265617 tgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtc 7265666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 30866168 - 30866217
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  30866168 tgaattatgtgattttctcaaattattagcggtgttggtgtgtcggtgtc 30866217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 26562724 - 26562676
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgt 314  Q
    |||||||||||||||||||||||| |||||||||| || ||||||||||    
T  26562724 tgaattatgtgattttctcaaatttttagcagtgtcggcgtgtccgtgt 26562676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 43751 - 43709
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgt 308  Q
    ||||||| |||||||||||||||||||||||||||||| ||||    
T  43751 tgaattacgtgattttctcaaattattagcagtgttggtgtgt 43709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 320
Target Start/End: Complemental strand, 2117111 - 2117057
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtc 320  Q
    |||||||||||||||| ||||||||||||  |||| ||||||||||| |||||||    
T  2117111 tgaattatgtgattttttcaaattattagaggtgtcggagtgtccgtatcgtgtc 2117057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 9025518 - 9025552
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||||||||||||||||||||||||||||||    
T  9025518 tgaattatgtgattttctcaaattattagcagtgt 9025552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 320
Target Start/End: Original strand, 19602205 - 19602259
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtc 320  Q
    |||||||| | ||||||||||||||||| ||||||||| |||||||||| |||||    
T  19602205 tgaattatatcattttctcaaattattatcagtgttggtgtgtccgtgttgtgtc 19602259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 32978844 - 32978892
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    |||||||||||||||||||||||| | |||||  |||||||||||||||    
T  32978844 aagcacggacactccttggattagacgtgtcccggtgtcggacatgtgt 32978892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 299
Target Start/End: Complemental strand, 7086828 - 7086797
Alignment:
Q  268 aattatgtgattttctcaaattattagcagtg 299  Q
    ||||||||||||||||||||||||||||||||    
T  7086828 aattatgtgattttctcaaattattagcagtg 7086797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 299
Target Start/End: Original strand, 8805598 - 8805629
Alignment:
Q  268 aattatgtgattttctcaaattattagcagtg 299  Q
    ||||||||||||||||||||||||||||||||    
T  8805598 aattatgtgattttctcaaattattagcagtg 8805629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 10842565 - 10842518
Alignment:
Q  268 aattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||| ||||||||||||| |||| || |||||||||||    
T  10842565 aattatgtgattttttcaaattattagcggtgtcggcgtgtccgtgtc 10842518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 19040387 - 19040344
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtc 309  Q
    |||||||||||||||||||||||||||||| |||| || |||||    
T  19040387 tgaattatgtgattttctcaaattattagcggtgtcggcgtgtc 19040344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 32299310 - 32299267
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtc 309  Q
    |||||||||||||||||||||||||||| ||| ||||| |||||    
T  32299310 tgaattatgtgattttctcaaattattatcagggttggtgtgtc 32299267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 320
Target Start/End: Complemental strand, 7378014 - 7377960
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtc 320  Q
    |||||||||||||||||||||||| ||||| |||| || ||||| |||| |||||    
T  7378014 tgaattatgtgattttctcaaatttttagcggtgtcggggtgtctgtgttgtgtc 7377960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 7723274 - 7723308
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||| ||||||||||||||||||||||||||    
T  7723274 tgaattatatgattttctcaaattattagcagtgt 7723308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 7996402 - 7996436
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||| ||||||||||||||||||||||||||    
T  7996402 tgaattatatgattttctcaaattattagcagtgt 7996436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 300
Target Start/End: Complemental strand, 8022399 - 8022365
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||| ||||||||||||||||||||||||||    
T  8022399 tgaattatatgattttctcaaattattagcagtgt 8022365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 9658914 - 9658865
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||||| ||||||||||| |||| || ||||| |||||    
T  9658914 tgaattatgtgattttcttaaattattagcggtgtcggcgtgtcagtgtc 9658865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 10770698 - 10770747
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||| ||||||||||||  ||||||| ||||| |||||    
T  10770698 tgaattatgtgattttttcaaattattagttgtgttggcgtgtcagtgtc 10770747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Original strand, 13632025 - 13632058
Alignment:
Q  269 attatgtgattttctcaaattattagcagtgttg 302  Q
    ||||||||||||| ||||||||||||||||||||    
T  13632025 attatgtgattttttcaaattattagcagtgttg 13632058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 16766732 - 16766683
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||| ||||||||||||| |||| || ||||| |||||    
T  16766732 tgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 16766683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 303
Target Start/End: Original strand, 31579249 - 31579286
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttgg 303  Q
    |||||||||||||||||||||||||||| | |||||||    
T  31579249 tgaattatgtgattttctcaaattattaacggtgttgg 31579286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 33001315 - 33001356
Alignment:
Q  268 aattatgtgattttctcaaattattagcagtgttggagtgtc 309  Q
    |||||||||||||| |||||||||||||||||| || |||||    
T  33001315 aattatgtgattttttcaaattattagcagtgtcggcgtgtc 33001356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 9027212 - 9027164
Alignment:
Q  267 gaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    ||||||||||||| ||||||||||||||| |||| || ||||| |||||    
T  9027212 gaattatgtgattatctcaaattattagcggtgtcggcgtgtcagtgtc 9027164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 10339059 - 10339107
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    ||||||||||||||||  |||||| | ||||| ||||||||||||||||    
T  10339059 aagcacggacactcctccgattaggcgtgtcccagtgtcggacatgtgt 10339107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 6427385 - 6427336
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  6427385 tgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtc 6427336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 1262919 - 1262871
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgt 314  Q
    |||||||||||||||||||||||||||||| |||| || ||||||||||    
T  1262919 tgaattatgtgattttctcaaattattagctgtgtcggcgtgtccgtgt 1262871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 12443484 - 12443530
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgt 312  Q
    |||||||||||||||||||||||||||||| |||| || ||||||||    
T  12443484 tgaattatgtgattttctcaaattattagctgtgtcggcgtgtccgt 12443530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 38075998 - 38076048
Alignment:
Q  270 ttatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtc 320  Q
    ||||||||||| ||||||||||||||||||| |  ||||||||||||||||    
T  38075998 ttatgtgatttactcaaattattagcagtgtcgtcgtgtccgtgtcgtgtc 38076048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 300
Target Start/End: Complemental strand, 40181906 - 40181872
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||||||||||||||||||||||||||||||    
T  40181906 tgaattatgtgattttctcaaattattagcagtgt 40181872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 2896145 - 2896194
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||||||||||||||||| |||| || ||||| |||||    
T  2896145 tgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 2896194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 25098579 - 25098636
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtctgt 323  Q
    |||||||||||||||||||||||||| ||| |||| ||  ||||| ||||||||||||    
T  25098579 tgaattatgtgattttctcaaattatcagcggtgtcggcttgtccttgtcgtgtctgt 25098636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 303
Target Start/End: Original strand, 25452172 - 25452209
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttgg 303  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  25452172 tgaattatgagattttctcaaattattagcagtgttgg 25452209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 36878496 - 36878447
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||||||||||||||||| |||| || ||||| |||||    
T  36878496 tgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 36878447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 36906032 - 36905983
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||| |||||    
T  36906032 tgaattatgtgattttctcagattattagcggtgttggtgtgtcagtgtc 36905983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 40285678 - 40285727
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    ||||||||| |||||||||||||||||||| ||||||| ||||| |||||    
T  40285678 tgaattatgcgattttctcaaattattagcggtgttggtgtgtcagtgtc 40285727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 17831555 - 17831606
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgt 317  Q
    ||||| |||||||||||||||||||||||| |||| || ||||| |||||||    
T  17831555 tgaataatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtcgt 17831606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 3490426 - 3490468
Alignment:
Q  278 ttttctcaaattattagcagtgttggagtgtccgtgtcgtgtc 320  Q
    ||||||||||||||||||||||| || ||||| ||||||||||    
T  3490426 ttttctcaaattattagcagtgtcggcgtgtcagtgtcgtgtc 3490468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 9709854 - 9709793
Alignment:
Q  267 gaattatgtgattttctcaaattattagcagtgttgg------agtgtccgtgtcgtgtctg 322  Q
    ||||||||||||||||||||||||||||| |||| ||      |||||||||||||||||||    
T  9709854 gaattatgtgattttctcaaattattagcggtgtaggcatgtcagtgtccgtgtcgtgtctg 9709793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 320
Target Start/End: Complemental strand, 10233288 - 10233234
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtc 320  Q
    ||||||||||||||||||||| |||||||  ||||||| ||||||  ||||||||    
T  10233288 tgaattatgtgattttctcaatttattagtggtgttggtgtgtccaagtcgtgtc 10233234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 320
Target Start/End: Original strand, 10475001 - 10475055
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtc 320  Q
    ||||||||||||||||||||| |||||||| |||| || |||||  |||||||||    
T  10475001 tgaattatgtgattttctcaagttattagcggtgtcggcgtgtcaatgtcgtgtc 10475055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 300
Target Start/End: Complemental strand, 19324597 - 19324563
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||||||||||||||||||||| ||||||||    
T  19324597 tgaattatgtgattttctcaaattatcagcagtgt 19324563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 300
Target Start/End: Complemental strand, 31015078 - 31015044
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||||||||||||||||||||||||| ||||    
T  31015078 tgaattatgtgattttctcaaattattagctgtgt 31015044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 398789 - 398838
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||| ||||||||||||| |||| || ||||| |||||    
T  398789 tgaattatgtgattttttcaaattattagcggtgtcggcgtgtcagtgtc 398838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 13436493 - 13436444
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    ||||||||||||||| || |||||||||||||||| || |||| ||||||    
T  13436493 tgaattatgtgatttccttaaattattagcagtgtcggcgtgttcgtgtc 13436444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 19909328 - 19909283
Alignment:
Q  270 ttatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||||||||||||| ||||| | |||| ||||||    
T  19909328 ttatgtgattttctcaaattattagcggtgttagtgtgttcgtgtc 19909283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 23531802 - 23531851
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    ||||||||||||| || |||||||||||||||| ||| |||||| |||||    
T  23531802 tgaattatgtgatattttcaaattattagcagtattgaagtgtcggtgtc 23531851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 24577210 - 24577263
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgt 319  Q
    |||||||||||||||| ||||||||||||  ||||  | |||||||||||||||    
T  24577210 tgaattatgtgattttttcaaattattagttgtgtcagcgtgtccgtgtcgtgt 24577263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 294
Target Start/End: Original strand, 7918235 - 7918263
Alignment:
Q  266 tgaattatgtgattttctcaaattattag 294  Q
    |||||||||||||||||||||||||||||    
T  7918235 tgaattatgtgattttctcaaattattag 7918263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 18337443 - 18337395
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    |||||||||||||||| |||| || ||||||| ||||||||||| ||||    
T  18337443 aagcacggacactcctcggatcaggcatgtcccagtgtcggacacgtgt 18337395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 19562645 - 19562693
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgt 314  Q
    |||| |||| ||||||||||||||||||||||||| || ||||| ||||    
T  19562645 tgaactatgagattttctcaaattattagcagtgtcggcgtgtcagtgt 19562693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 22881642 - 22881694
Alignment:
Q  268 aattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtc 320  Q
    |||||||||||||| ||||||||||||  |||| || ||||| ||||||||||    
T  22881642 aattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtcgtgtc 22881694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 300
Target Start/End: Complemental strand, 29229490 - 29229462
Alignment:
Q  272 atgtgattttctcaaattattagcagtgt 300  Q
    |||||||||||||||||||||||||||||    
T  29229490 atgtgattttctcaaattattagcagtgt 29229462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 294
Target Start/End: Complemental strand, 34298471 - 34298443
Alignment:
Q  266 tgaattatgtgattttctcaaattattag 294  Q
    |||||||||||||||||||||||||||||    
T  34298471 tgaattatgtgattttctcaaattattag 34298443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 17123080 - 17123034
Alignment:
Q  269 attatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    ||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  17123080 attatgtgattttctcaaattattagcggtgttggcgtgtcagtgtc 17123034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 320
Target Start/End: Complemental strand, 31084358 - 31084304
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtc 320  Q
    |||||||||||||||| ||||||||||||| |||| || ||||| ||||||||||    
T  31084358 tgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 31084304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 300
Target Start/End: Complemental strand, 26716178 - 26716145
Alignment:
Q  267 gaattatgtgattttctcaaattattagcagtgt 300  Q
    ||||||||||||||||||||||||||||||||||    
T  26716178 gaattatgtgattttctcaaattattagcagtgt 26716145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 300
Target Start/End: Complemental strand, 26985918 - 26985885
Alignment:
Q  267 gaattatgtgattttctcaaattattagcagtgt 300  Q
    ||||||||||||||||||||||||||||||||||    
T  26985918 gaattatgtgattttctcaaattattagcagtgt 26985885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 30502333 - 30502381
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    ||||||| ||| |||||||||||| ||||||| ||||||||||||||||    
T  30502333 aagcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgt 30502381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 30542676 - 30542724
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    ||||||| ||| |||||||||||| ||||||| ||||||||||||||||    
T  30542676 aagcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgt 30542724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 320
Target Start/End: Original strand, 6471913 - 6471965
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtc 320  Q
    |||||||||||||||||||||||||||||| ||||   |||||||||||| ||||    
T  6471913 tgaattatgtgattttctcaaattattagccgtgt--cagtgtccgtgtcatgtc 6471965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 39205913 - 39205866
Alignment:
Q  268 aattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||| |||||||||||||||||||||||||| |  |||||||||||    
T  39205913 aattatatgattttctcaaattattagcagtgtcgacgtgtccgtgtc 39205866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 22423836 - 22423870
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgt 300  Q
    ||||||||||||||||||||||||||||| |||||    
T  22423836 tgaattatgtgattttctcaaattattagtagtgt 22423870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 41091281 - 41091315
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgt 300  Q
    ||||||||||||||||||||||| |||||||||||    
T  41091281 tgaattatgtgattttctcaaatcattagcagtgt 41091315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 42893392 - 42893346
Alignment:
Q  269 attatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    ||||||||||||| ||||||||||||| |||| || |||||||||||    
T  42893392 attatgtgattttttcaaattattagctgtgtcggtgtgtccgtgtc 42893346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 320
Target Start/End: Complemental strand, 2436956 - 2436903
Alignment:
Q  267 gaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtc 320  Q
    |||||||||||||||  |||||||||||| |||| || ||||| ||||||||||    
T  2436956 gaattatgtgatttttgcaaattattagcggtgtcggcgtgtcagtgtcgtgtc 2436903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 5004023 - 5003978
Alignment:
Q  115 atacatcagctattcaataaaactgaaaaaataatttttgcttata 160  Q
    ||||||||| |||||||| ||| |||||||| ||||||||||||||    
T  5004023 atacatcagttattcaatgaaattgaaaaaacaatttttgcttata 5003978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 303
Target Start/End: Original strand, 21576769 - 21576806
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttgg 303  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  21576769 tgaattatgtgattttttcaaattattagctgtgttgg 21576806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 31084439 - 31084394
Alignment:
Q  218 cacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    ||||||||||||| ||||||| ||||||| ||||||||||| ||||    
T  31084439 cacggacactcctcggattaggcatgtcccagtgtcggacacgtgt 31084394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 323
Target Start/End: Complemental strand, 14674302 - 14674246
Alignment:
Q  268 aattatgtgattttctcaaattattagcagtgttggagtgtccgtgt-cgtgtctgt 323  Q
    |||||||||||||| ||||||||||||| |||| || ||||| |||| |||||||||    
T  14674302 aattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtctgt 14674246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 300
Target Start/End: Original strand, 16203821 - 16203853
Alignment:
Q  268 aattatgtgattttctcaaattattagcagtgt 300  Q
    ||||||| |||||||||||||||||||||||||    
T  16203821 aattatgagattttctcaaattattagcagtgt 16203853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 19579734 - 19579702
Alignment:
Q  268 aattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||||||||||||||||||||||| ||||    
T  19579734 aattatgtgattttctcaaattattagctgtgt 19579702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 19820427 - 19820467
Alignment:
Q  275 tgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    ||||||||||||||||||||| |||| |||||||| |||||    
T  19820427 tgattttctcaaattattagcggtgtcggagtgtcagtgtc 19820467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 22611761 - 22611817
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtctg 322  Q
    |||||||||||||||| |||||||||||| ||||| || ||||| || || ||||||    
T  22611761 tgaattatgtgattttttcaaattattaggagtgtcggcgtgtctgtatcatgtctg 22611817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 300
Target Start/End: Complemental strand, 9624676 - 9624642
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||||||||||||||||||||||||||||||    
T  9624676 tgaattatgtgattttctcaaattattagcagtgt 9624642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 320
Target Start/End: Complemental strand, 40052367 - 40052313
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtc 320  Q
    |||||||||||||||| ||||||||||||| |||| || ||||| ||||||||||    
T  40052367 tgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 40052313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 300
Target Start/End: Original strand, 11313826 - 11313858
Alignment:
Q  268 aattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||||||||||||||||||||||||||||    
T  11313826 aattatgtgattttctcaaattattagcagtgt 11313858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 300
Target Start/End: Original strand, 27277864 - 27277896
Alignment:
Q  268 aattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||||||||||||||||||||||||||||    
T  27277864 aattatgtgattttctcaaattattagcagtgt 27277896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 1389952 - 1389909
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggaca 258  Q
    |||||||||||||||||||||||| |||||||  ||||||||||    
T  1389952 aagcacggacactccttggattaggcatgtcctggtgtcggaca 1389909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 301
Target Start/End: Complemental strand, 45451588 - 45451553
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgtt 301  Q
    |||| |||||||||||||||||||||||||||||||    
T  45451588 tgaagtatgtgattttctcaaattattagcagtgtt 45451553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 320
Target Start/End: Complemental strand, 1438839 - 1438785
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtc 320  Q
    |||||||||||||||||||||||| |||||  ||| || ||||| ||||||||||    
T  1438839 tgaattatgtgattttctcaaattgttagcgatgtcggtgtgtcagtgtcgtgtc 1438785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 296
Target Start/End: Complemental strand, 11252013 - 11251983
Alignment:
Q  266 tgaattatgtgattttctcaaattattagca 296  Q
    |||||||||||||||||||||||||||||||    
T  11252013 tgaattatgtgattttctcaaattattagca 11251983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 13807204 - 13807162
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgt 308  Q
    |||||||||||||||||||||||| ||| ||||||||| ||||    
T  13807204 tgaattatgtgattttctcaaattgttatcagtgttggcgtgt 13807162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 320
Target Start/End: Complemental strand, 21479153 - 21479099
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtc 320  Q
    |||||| ||||||||| ||||||||||||| |||| || ||||| ||||||||||    
T  21479153 tgaattgtgtgattttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 21479099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 320
Target Start/End: Original strand, 8789575 - 8789628
Alignment:
Q  267 gaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtc 320  Q
    ||||||||||||||||||||||||| ||| |||| || ||||| |||| |||||    
T  8789575 gaattatgtgattttctcaaattataagccgtgtcggtgtgtctgtgttgtgtc 8789628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 4987315 - 4987363
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgt 314  Q
    |||||||||||||||| ||||||||||||| |||| || ||||| ||||    
T  4987315 tgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 4987363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 12674528 - 12674568
Alignment:
Q  269 attatgtgattttctcaaattattagcagtgttggagtgtc 309  Q
    ||||| |||||||||||||||||||||||||| || |||||    
T  12674528 attatttgattttctcaaattattagcagtgtcggtgtgtc 12674568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 27505365 - 27505317
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    |||||||||||||||| ||||||| |||||||  |||||||||| ||||    
T  27505365 aagcacggacactcctcggattaggcatgtcccggtgtcggacacgtgt 27505317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 28918117 - 28918069
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    ||||| |||||||||||||||||| | ||||| ||||||||||| ||||    
T  28918117 aagcagggacactccttggattaggcgtgtcccagtgtcggacacgtgt 28918069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 49651808 - 49651844
Alignment:
Q  264 agtgaattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  49651808 agtgaattatgtgattttttcaaattattagccgtgt 49651844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 300
Target Start/End: Original strand, 135337 - 135370
Alignment:
Q  267 gaattatgtgattttctcaaattattagcagtgt 300  Q
    ||||||||||||||||||||||||||||||||||    
T  135337 gaattatgtgattttctcaaattattagcagtgt 135370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 36635359 - 36635310
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||||||||||||||||  ||||||| ||||| |||||    
T  36635359 tgaattatgtgattttctcaaattattagtggtgttggcgtgtcagtgtc 36635310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 15659785 - 15659821
Alignment:
Q  267 gaattatgtgattttctcaaattattagcagtgttgg 303  Q
    |||||||| ||||||||||||||||||||||||||||    
T  15659785 gaattatgagattttctcaaattattagcagtgttgg 15659821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 320
Target Start/End: Original strand, 21873395 - 21873447
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtc 320  Q
    |||||||||||||||| |||||||||| |||||||   |||||||||||||||||    
T  21873395 tgaattatgtgattttatcaaattatttgcagtgt--cagtgtccgtgtcgtgtc 21873447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 320
Target Start/End: Original strand, 21929256 - 21929308
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtc 320  Q
    |||||||||||||||| |||||||||| |||||||   |||||||||||||||||    
T  21929256 tgaattatgtgattttatcaaattatttgcagtgt--cagtgtccgtgtcgtgtc 21929308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 24235634 - 24235587
Alignment:
Q  115 atacatcagctattcaataaaactgaaaaaataatttttgcttataat 162  Q
    ||||||||| |||||||| || ||||||||||||| ||||||||||||    
T  24235634 atacatcagttattcaatgaatctgaaaaaataatatttgcttataat 24235587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 319
Target Start/End: Complemental strand, 50280914 - 50280863
Alignment:
Q  268 aattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgt 319  Q
    |||||||||| ||| ||||||||||||| |||| || |||||||||||||||    
T  50280914 aattatgtgaatttttcaaattattagctgtgtcggcgtgtccgtgtcgtgt 50280863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 8423742 - 8423776
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||||||||||||||||||||||||| ||||    
T  8423742 tgaattatgtgattttctcaaattattagcggtgt 8423776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 320
Target Start/End: Complemental strand, 15029800 - 15029746
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtc 320  Q
    ||||||||||||| || ||||||||||||||||||  | ||||| ||||||||||    
T  15029800 tgaattatgtgatattttcaaattattagcagtgtctgcgtgtcagtgtcgtgtc 15029746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 29205479 - 29205432
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||| ||||||||||||| ||||||  |||||||||||    
T  29205479 tgaattatgtgattttttcaaattattagccgtgttg--gtgtccgtgtc 29205432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 33950169 - 33950123
Alignment:
Q  268 aattatgtgattttctcaaattattagcagtgttggagtgtccgtgt 314  Q
    |||||||||||||||||||||||||||| | |||| |||||| ||||    
T  33950169 aattatgtgattttctcaaattattagcggcgttgaagtgtcagtgt 33950123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 300
Target Start/End: Complemental strand, 56257968 - 56257934
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgt 300  Q
    |||||||| ||||||||||||||||||||||||||    
T  56257968 tgaattatatgattttctcaaattattagcagtgt 56257934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 7214548 - 7214592
Alignment:
Q  268 aattatgtgattttctcaaattattagcagtgttggagtgtccgtg 313  Q
    |||||||||||||||||||||||||||  ||||| |||||||||||    
T  7214548 aattatgtgattttctcaaattattagtggtgtt-gagtgtccgtg 7214592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 14465099 - 14465148
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||| ||||||||||||  ||||| ||||||| |||||    
T  14465099 tgaattatgtgattttttcaaattattaggtgtgttagagtgtcagtgtc 14465148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 303
Target Start/End: Complemental strand, 16189744 - 16189707
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttgg 303  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  16189744 tgaattatgtgattttctcaaatttttagcggtgttgg 16189707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 303
Target Start/End: Original strand, 17425413 - 17425450
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttgg 303  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  17425413 tgaattatgcgattttctcaaattattaggagtgttgg 17425450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 295
Target Start/End: Original strand, 34200295 - 34200324
Alignment:
Q  266 tgaattatgtgattttctcaaattattagc 295  Q
    ||||||||||||||||||||||||||||||    
T  34200295 tgaattatgtgattttctcaaattattagc 34200324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 715550 - 715598
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    |||||||||||||||| ||||||| | |||||  |||||||||||||||    
T  715550 aagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgt 715598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 752876 - 752924
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    |||||||||||||||| ||||||| | |||||  |||||||||||||||    
T  752876 aagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgt 752924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 847989 - 847957
Alignment:
Q  263 tagtgaattatgtgattttctcaaattattagc 295  Q
    ||||||||||||| |||||||||||||||||||    
T  847989 tagtgaattatgtaattttctcaaattattagc 847957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 1074830 - 1074782
Alignment:
Q  269 attatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgt 317  Q
    ||||||||||||||||||||||||||  ||||  | |||||||||||||    
T  1074830 attatgtgattttctcaaattattagtggtgtcagtgtgtccgtgtcgt 1074782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 298
Target Start/End: Complemental strand, 12077863 - 12077831
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagt 298  Q
    |||||||||||||||||||||||||||| ||||    
T  12077863 tgaattatgtgattttctcaaattattaacagt 12077831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 294
Target Start/End: Original strand, 24613725 - 24613753
Alignment:
Q  266 tgaattatgtgattttctcaaattattag 294  Q
    |||||||||||||||||||||||||||||    
T  24613725 tgaattatgtgattttctcaaattattag 24613753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 28084638 - 28084590
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    |||||||||||||||| ||||||| | ||||| ||||||||||| ||||    
T  28084638 aagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgt 28084590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 29205582 - 29205534
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    ||||||| |||||||| ||||||| | ||||| ||||||||||||||||    
T  29205582 aagcacgaacactcctcggattaggcgtgtcccagtgtcggacatgtgt 29205534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 263396 - 263432
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttg 302  Q
    ||||||||||| |||||||||||||||||||||||||    
T  263396 tgaattatgtggttttctcaaattattagcagtgttg 263432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 13435 - 13386
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||||||||||||||||  |||| || ||||| |||||    
T  13435 tgaattatgtgattttctcaaattattagttgtgtcggcgtgtcagtgtc 13386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 21892 - 21941
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||||||||||||||||  |||| || ||||| |||||    
T  21892 tgaattatgtgattttctcaaattattagttgtgtcggcgtgtcagtgtc 21941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 51846 - 51797
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||||||||| ||||||||||||| |||| || ||||| |||||    
T  51846 tgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 51797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 92842 - 92793
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtc 315  Q
    |||||||||| ||||||||||||||||||| |||| || ||||| |||||    
T  92842 tgaattatgtaattttctcaaattattagcggtgtcggcgtgtcagtgtc 92793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 92936 - 92888
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    |||||||||||||||| ||||||| | |||||| ||||| |||||||||    
T  92936 aagcacggacactcctcggattaggcgtgtccaggtgtccgacatgtgt 92888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 4826 - 4874
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    |||||||||||||||| ||||||| | |||||  |||||||||||||||    
T  4826 aagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgt 4874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 8715 - 8667
Alignment:
Q  215 aagcacggacactccttggattagccatgtccaagtgtcggacatgtgt 263  Q
    |||||||||||||||||||||||| | | ||| ||||||||||| ||||    
T  8715 aagcacggacactccttggattaggcgtatcccagtgtcggacacgtgt 8667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 44549 - 44605
Alignment:
Q  266 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgtcgtgtctg 322  Q
    |||||||||||||||||||||||| ||||| ||||  |  ||||| |||||||||||    
T  44549 tgaattatgtgattttctcaaatttttagcggtgtcagcttgtccctgtcgtgtctg 44605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 294
Target Start/End: Complemental strand, 26428 - 26400
Alignment:
Q  266 tgaattatgtgattttctcaaattattag 294  Q
    |||||||||||||||||||||||||||||    
T  26428 tgaattatgtgattttctcaaattattag 26400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University