View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15473_low_1 (Length: 503)

Name: NF15473_low_1
Description: NF15473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15473_low_1
NF15473_low_1
[»] chr4 (9 HSPs)
chr4 (259-496)||(21800970-21801207)
chr4 (263-487)||(45892962-45893182)
chr4 (263-453)||(48665477-48665663)
chr4 (10-137)||(21800723-21800848)
chr4 (338-487)||(12583525-12583673)
chr4 (263-443)||(49421029-49421208)
chr4 (97-131)||(14269596-14269630)
chr4 (100-137)||(45893309-45893346)
chr4 (103-137)||(49421305-49421339)
[»] chr7 (12 HSPs)
chr7 (263-487)||(23773068-23773288)
chr7 (316-487)||(26469940-26470112)
chr7 (316-487)||(26546380-26546552)
chr7 (265-470)||(11275814-11276006)
chr7 (261-371)||(22859647-22859752)
chr7 (259-321)||(26469812-26469869)
chr7 (259-321)||(26546284-26546341)
chr7 (293-366)||(12119548-12119621)
chr7 (99-137)||(26469657-26469695)
chr7 (99-137)||(26546129-26546167)
chr7 (97-127)||(46463667-46463697)
chr7 (263-324)||(33435765-33435822)
[»] scaffold0219 (1 HSPs)
scaffold0219 (262-483)||(6216-6433)
[»] chr3 (2 HSPs)
chr3 (259-487)||(6000194-6000418)
chr3 (99-129)||(11217966-11217996)
[»] chr2 (5 HSPs)
chr2 (259-487)||(36658048-36658272)
chr2 (97-137)||(29463343-29463383)
chr2 (100-137)||(36657891-36657928)
chr2 (295-349)||(20361543-20361597)
chr2 (295-356)||(20429347-20429409)
[»] chr6 (2 HSPs)
chr6 (263-484)||(23660945-23661162)
chr6 (100-137)||(23660778-23660815)
[»] scaffold0527 (2 HSPs)
scaffold0527 (263-491)||(3599-3818)
scaffold0527 (315-491)||(11662-11834)
[»] chr8 (2 HSPs)
chr8 (263-479)||(923420-923630)
chr8 (294-337)||(42773176-42773219)
[»] chr1 (2 HSPs)
chr1 (270-454)||(16180807-16180990)
chr1 (293-358)||(9004840-9004906)
[»] chr5 (2 HSPs)
chr5 (294-470)||(32538367-32538546)
chr5 (100-128)||(30739538-30739566)
[»] scaffold0445 (1 HSPs)
scaffold0445 (100-137)||(7122-7159)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-119; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 259 - 496
Target Start/End: Original strand, 21800970 - 21801207
Alignment:
Q  259 gccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaatatatttat 358  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21800970 gccacaatgatgataaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgttacgtgtttttatgtataaatgaaaatatatttat 21801069  T
Q  359 gggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgt 458  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21801070 gggtttcagatcaccgttgattaagcgccgcaacagctgtcctttcaaagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgt 21801169  T
Q  459 cgttgtcttgtagagatctggtgttgacgtgatgatgt 496  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  21801170 cgttgtcttgtagagatctggtgttgacgtgattatgt 21801207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 263 - 487
Target Start/End: Complemental strand, 45893182 - 45892962
Alignment:
Q  263 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatatttatggg 361  Q
    |||||||||||||||||||||||||||||     | |||||||| | ||||||||||||||| |||||||||||||||||||||||| ||||||||| ||    
T  45893182 caatgatgacaaatatgtgtcacatgttt-----tcatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttatagg 45893088  T
Q  362 tttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgt 461  Q
    |||||||||  ||||||| ||||||||| ||  ||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||  ||| ||    
T  45893087 tttcagatcgtcgttgatgaagcgccgccacggctgtccttttagagtcttggtgtgtgttgattctattgtggtcgctggtttcgttcaacatcgttgt 45892988  T
Q  462 tgtcttgtagagatctggtgttgacg 487  Q
    |||||| ||||| | |||||||||||    
T  45892987 tgtcttatagagctatggtgttgacg 45892962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 263 - 453
Target Start/End: Original strand, 48665477 - 48665663
Alignment:
Q  263 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaata-tatttatggg 361  Q
    |||||||||||||||||||||||||||||     |||||||||| ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  48665477 caatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaaaatatttatggg 48665571  T
Q  362 tttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaac 453  Q
    ||| |||||  ||| ||| |||||||||| |  ||||||||||||||||||  ||||||||||||||||||||||  ||||||| |||||||    
T  48665572 ttttagatcgtcgtcgatgaagcgccgcagcggctgtcctttcagagtctttttgtgtgttgattctattgtggttgctggtttcgttcaac 48665663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 21800723 - 21800848
Alignment:
Q  10 cgaagaatattcacctcgaacttggagtgtacaannnnnnnnnnaattaacaacttattaaataatatatttattacttgcatgtactatactagtgtgt 109  Q
    |||| |||||||||||||||||||||||||||||          ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21800723 cgaataatattcacctcgaacttggagtgtacaatttttttt--aattaacaacttattgaataatatatttattacttgcatgtactatactagtgtgt 21800820  T
Q  110 taacccgtgcaatgcacgggtgatagac 137  Q
    ||||||||||||||||||||||||||||    
T  21800821 taacccgtgcaatgcacgggtgatagac 21800848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 338 - 487
Target Start/End: Complemental strand, 12583673 - 12583525
Alignment:
Q  338 tataaatgaaaa-tatatttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggt 436  Q
    |||||||||||| |||||||||||||||||||||  ||| ||| ||||||| || | |||||||||||| |||| ||||||||  ||||| |||||| ||    
T  12583673 tataaatgaaaaatatatttatgggtttcagatcgtcgtcgatgaagcgcctcagcgactgtcctttcatagtcatggtgtgt--tgattatattgtcgt 12583576  T
Q  437 cactggttttgttcaacgccgtcgttgtcttgtagagatctggtgttgacg 487  Q
    ||||||||| |||||||| ||| |||||||||||||| |||||||||||||    
T  12583575 cactggtttcgttcaacgtcgttgttgtcttgtagagctctggtgttgacg 12583525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 263 - 443
Target Start/End: Complemental strand, 49421208 - 49421029
Alignment:
Q  263 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatggg 361  Q
    ||||||||| ||||| ||||| ||| |||  |||||||||||||||||| |||| ||||||| ||| |||||||| ||||| | |||||||||||||| |    
T  49421208 caatgatgataaatacgtgtctcatattt--tttttatgtttattagtgataaacatatgtctcgtatttttatgcataaaagaaaaatatatttatgag 49421111  T
Q  362 tttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggt 443  Q
    ||| | |||| ||| | | |||||||||  | |||||||| ||| ||||||| |||  ||||||||| |||| |||||||||    
T  49421110 ttttatatcatcgtcggtgaagcgccgccccgactgtcctctcacagtcttgatgtaagttgattctgttgttgtcactggt 49421029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 14269630 - 14269596
Alignment:
Q  97 tatactagtgtgttaacccgtgcaatgcacgggtg 131  Q
    |||||||||||||||||||||||||||||||||||    
T  14269630 tatactagtgtgttaacccgtgcaatgcacgggtg 14269596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 45893346 - 45893309
Alignment:
Q  100 actagtgtgttaacccgtgcaatgcacgggtgatagac 137  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  45893346 actagtgtgttaacccgtgcaatgcgcgggtgatagac 45893309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 49421339 - 49421305
Alignment:
Q  103 agtgtgttaacccgtgcaatgcacgggtgatagac 137  Q
    |||||||||||||| ||||||||||||||||||||    
T  49421339 agtgtgttaacccgcgcaatgcacgggtgatagac 49421305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 9e-65; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 263 - 487
Target Start/End: Original strand, 23773068 - 23773288
Alignment:
Q  263 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatggg 361  Q
    |||||||||||||||||||||||| |     ||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |    
T  23773068 caatgatgacaaatatgtgtcacagg-----tttttatgtttatcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttatgag 23773162  T
Q  362 tttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgt 461  Q
    |||||||||  ||| ||| |||||||||| |  || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||    
T  23773163 tttcagatcgtcgtcgatgaagcgccgcagcggctatcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgtttaacatcgtcgt 23773262  T
Q  462 tgtcttgtagagatctggtgttgacg 487  Q
    ||| |||||||| | |||||||||||    
T  23773263 tgtattgtagagctatggtgttgacg 23773288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 316 - 487
Target Start/End: Original strand, 26469940 - 26470112
Alignment:
Q  316 atatatgtcacgtgtttttatgtataaatg-aaaatatatttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttgg 414  Q
    |||||| || ||||||||| |||||||||| |||||||||||||||||||||| ||  ||| ||| |||||||||| |   |||||||| | ||||||||    
T  26469940 atatatatcccgtgtttttgtgtataaatggaaaatatatttatgggtttcagttcgtcgtcgatgaagcgccgcagcggttgtccttttaaagtcttgg 26470039  T
Q  415 tgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttgtcttgtagagatctggtgttgacg 487  Q
    |||||||||||||||| |||||||||||||| |||||||  |||||  ||||||||||| | |||||||||||    
T  26470040 tgtgtgttgattctatcgtggtcactggtttcgttcaacatcgtcgacgtcttgtagagctatggtgttgacg 26470112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 316 - 487
Target Start/End: Original strand, 26546380 - 26546552
Alignment:
Q  316 atatatgtcacgtgtttttatgtataaatg-aaaatatatttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttgg 414  Q
    |||||| || ||||||||| |||||||||| |||||||||||||||||||||| ||  ||| ||| |||||||||| |   |||||||| | ||||||||    
T  26546380 atatatatcccgtgtttttgtgtataaatggaaaatatatttatgggtttcagttcgtcgtcgatgaagcgccgcagcggttgtccttttaaagtcttgg 26546479  T
Q  415 tgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttgtcttgtagagatctggtgttgacg 487  Q
    |||||||||||||||| |||||||||||||| |||||||  |||||  ||||||||||| | |||||||||||    
T  26546480 tgtgtgttgattctatcgtggtcactggtttcgttcaacatcgtcgacgtcttgtagagctatggtgttgacg 26546552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 265 - 470
Target Start/End: Original strand, 11275814 - 11276006
Alignment:
Q  265 atgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatatttatgggtt 363  Q
    ||||||||||||||||||| ||| | |    |||| ||||||||||| ||||||||||||| || |||||||| ||||| ||||| |||||||| || ||    
T  11275814 atgatgacaaatatgtgtctcatatct----tttacgtttattagtgataaatatatgtcatgt-tttttatgcataaaagaaaaatatatttagggatt 11275908  T
Q  364 tcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttg 463  Q
    |||||||  ||         ||| ||  |||||||||| ||| |||||||||||| ||||||| | |||||||||||| |||||| ||||| ||| ||||    
T  11275909 tcagatcttcg---------cgcagccgcaactgtcctctcacagtcttggtgtgagttgattatgttgtggtcactgattttgtacaacgtcgttgttg 11275999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 22859647 - 22859752
Alignment:
Q  261 cacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttt-tatgtataaatgaaaatatatttatg 359  Q
    ||||||||| | |||||||||||||||      ||||||||||||||  || | ||||||||||  ||||||| ||||||||||||||||||||||||||    
T  22859647 cacaatgataataaatatgtgtcacat------tttttatgtttattgatgatgaatatatgtccggtgttttttatgtataaatgaaaatatatttatg 22859740  T
Q  360 ggtttcagatca 371  Q
    ||||||| ||||    
T  22859741 ggtttcatatca 22859752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 26469812 - 26469869
Alignment:
Q  259 gccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatat 321  Q
    ||||||||||||||||||||||||||||||     ||||||||||||| ||||||||||||||    
T  26469812 gccacaatgatgacaaatatgtgtcacatg-----tttttatgtttatcagtggtaaatatat 26469869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 26546284 - 26546341
Alignment:
Q  259 gccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatat 321  Q
    ||||||||||||||||||||||||||||||     ||||||||||||| ||||||||||||||    
T  26546284 gccacaatgatgacaaatatgtgtcacatg-----tttttatgtttatcagtggtaaatatat 26546341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 366
Target Start/End: Original strand, 12119548 - 12119621
Alignment:
Q  293 ttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatgggtttca 366  Q
    |||||||||||||||| || |||||||||||| | || ||||||| ||||||| ||||||||||||| |||||||    
T  12119548 ttttttatgtttattattgataaatatatgtcccatg-ttttatgcataaatgaaaaatatatttataggtttca 12119621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 26469657 - 26469695
Alignment:
Q  99 tactagtgtgttaacccgtgcaatgcacgggtgatagac 137  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  26469657 tactagtgtgttaacccttgcgatgcacgggtgatagac 26469695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 26546129 - 26546167
Alignment:
Q  99 tactagtgtgttaacccgtgcaatgcacgggtgatagac 137  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  26546129 tactagtgtgttaacccttgcgatgcacgggtgatagac 26546167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 127
Target Start/End: Complemental strand, 46463697 - 46463667
Alignment:
Q  97 tatactagtgtgttaacccgtgcaatgcacg 127  Q
    |||||||||||||||||||||||||||||||    
T  46463697 tatactagtgtgttaacccgtgcaatgcacg 46463667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 33435765 - 33435822
Alignment:
Q  263 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtc 324  Q
    ||||||||||||||||||||| ||    | |||||||| ||| |||||||||||||||||||    
T  33435765 caatgatgacaaatatgtgtccca----tattttttatttttgttagtggtaaatatatgtc 33435822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 262 - 483
Target Start/End: Complemental strand, 6433 - 6216
Alignment:
Q  262 acaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatgg 360  Q
    ||||||||||||||||||||||||||||||     |||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| ||    
T  6433 acaatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttacgg 6339  T
Q  361 gtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcg 460  Q
    ||||||||||  |||  || | |||| ||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||  ||||    
T  6338 gtttcagatcgtcgtcaatgacgcgctgcagcggctgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggtttcgttaaacgtagtcg 6239  T
Q  461 ttgtcttgtagagatctggtgtt 483  Q
    ||||||||||||| | |||||||    
T  6238 ttgtcttgtagagttatggtgtt 6216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 259 - 487
Target Start/End: Complemental strand, 6000418 - 6000194
Alignment:
Q  259 gccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatattta 357  Q
    |||||||||||||||||||||||||||||||||     |||||||||| |||||||||||||| || ||||||||| |||||||||||||| ||||||||    
T  6000418 gccacaatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtggtaaatatatatcccgtgtttttgtgtataaatgaaaaatatattta 6000324  T
Q  358 tgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccg 457  Q
    ||||||| || |   ||| ||| |||||||||| |  ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||  ||    
T  6000323 tgggttttagtttgtcgtcgatgaagcgccgcagcggctgtccttttagagtcttggtgtgtgttgattctattgtggtcactggtttcgttcaacatcg 6000224  T
Q  458 tcgttgtcttgtagagatctggtgttgacg 487  Q
    |||  ||||||||||| | |||||||||||    
T  6000223 tcgacgtcttgtagagctatggtgttgacg 6000194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 129
Target Start/End: Complemental strand, 11217996 - 11217966
Alignment:
Q  99 tactagtgtgttaacccgtgcaatgcacggg 129  Q
    |||||||||||||||||||||||||||||||    
T  11217996 tactagtgtgttaacccgtgcaatgcacggg 11217966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 259 - 487
Target Start/End: Original strand, 36658048 - 36658272
Alignment:
Q  259 gccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatattta 357  Q
    |||||||||||||||||||||||||||||||||     |||||||||| |||| |||||||||||| |||||||||||||||||||||||| ||||||||    
T  36658048 gccacaatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtgataaatatatgtcccgtgtttttatgtataaatgaaaagtatattta 36658142  T
Q  358 tgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccg 457  Q
    |||||||||||||  | | ||| |||||||||| |  ||||||| | ||||||||| | ||||| ||||||||||||||||||||||| |||||||| ||    
T  36658143 tgggtttcagatcgtcatcgatgaagcgccgcatcggctgtcctgttagagtcttgctttgtgtggattctattgtggtcactggtttcgttcaacgtcg 36658242  T
Q  458 tcgttgtcttgtagagatctggtgttgacg 487  Q
    |  ||||||||||||| | || ||||||||    
T  36658243 ttattgtcttgtagagctatgatgttgacg 36658272  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 29463343 - 29463383
Alignment:
Q  97 tatactagtgtgttaacccgtgcaatgcacgggtgatagac 137  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29463343 tatactagtgtgttaacccgtgcaatgcacgggtgatagac 29463383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 36657891 - 36657928
Alignment:
Q  100 actagtgtgttaacccgtgcaatgcacgggtgatagac 137  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36657891 actagtgtgttaacccgtgcaatgcacgggtgatagac 36657928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 20361597 - 20361543
Alignment:
Q  295 ttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa 349  Q
    ||||||||||||||||  ||||||||||||  |||||||||||||||| ||||||    
T  20361597 ttttatgtttattagttataaatatatgtcttgtgtttttatgtataagtgaaaa 20361543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 20429409 - 20429347
Alignment:
Q  295 ttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaat-gaaaatatattt 356  Q
    ||||||||||||||||  ||||||||||||  |||||||||||||| | | ||||||||||||    
T  20429409 ttttatgtttattagttataaatatatgtcttgtgtttttatgtatcagtggaaaatatattt 20429347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 263 - 484
Target Start/End: Original strand, 23660945 - 23661162
Alignment:
Q  263 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatatttatggg 361  Q
    ||||||||| |||||||||||||||||||     |||||||||| |||| ||||||||| ||  | ||||||||||||||||||||| ||||||||||||    
T  23660945 caatgatgagaaatatgtgtcacatgttt-----ttatgtttatcagtgctaaatatatatcctgcgtttttatgtataaatgaaaaatatatttatggg 23661039  T
Q  362 tttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgt 461  Q
    ||||||| |    |  || |||||||||| |  |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||   ||||||    
T  23661040 tttcagaccgtgatccatgaagcgccgcagcgcctgtcctttcagggtcttggtgtgtgttgattctattgtggtcactggtttcgttcaagttcgtcgt 23661139  T
Q  462 tgtcttgtagagatctggtgttg 484  Q
    |||||||||||| | ||||||||    
T  23661140 tgtcttgtagagctatggtgttg 23661162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 23660778 - 23660815
Alignment:
Q  100 actagtgtgttaacccgtgcaatgcacgggtgatagac 137  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  23660778 actagtgcgttaaccggtgcaatgcacgggtgatagac 23660815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 263 - 491
Target Start/End: Complemental strand, 3818 - 3599
Alignment:
Q  263 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatggg 361  Q
    |||||||||||||||||||||||||||||     |||||||||| |||||| |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  3818 caatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtggtgaatatatgtcccgtgtttttatgtataaatgaaaaatatatttatggg 3724  T
Q  362 tttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgt 461  Q
    ||| |||||  ||| ||| ||||||| || |  ||||||||| |||     ||||||||||||||||||||||||  ||||||| |||||| | ||||||    
T  3723 ttttagatcgtcgtcgatgaagcgccacagcggctgtccttttaga-----ggtgtgtgttgattctattgtggttgctggtttcgttcaaggtcgtcgt 3629  T
Q  462 tgtcttgtagagatctggtgttgacgtgat 491  Q
    |||||| ||||| | |||| ||||||||||    
T  3628 tgtcttatagagctatggtattgacgtgat 3599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 315 - 491
Target Start/End: Complemental strand, 11834 - 11662
Alignment:
Q  315 aatatatgtcacgtgtttttatgtataaatgaaaa-tatatttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttg 413  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||  ||| ||| ||||||| || |  ||||||||| ||||         
T  11834 aatatatgtcccgtgtttttatgtataaatgaaaaatatatttatgggttttagatcgtcgtcgatgaagcgccacagcggctgtccttttagag----- 11740  T
Q  414 gtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttgtcttgtagagatctggtgttgacgtgat 491  Q
    |||||||||||||||||||||||  ||||||| |||||| | |||||||||||| ||||| | |||| ||||||||||    
T  11739 gtgtgtgttgattctattgtggttgctggtttcgttcaaggtcgtcgttgtcttatagagctatggtattgacgtgat 11662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 263 - 479
Target Start/End: Original strand, 923420 - 923630
Alignment:
Q  263 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaatatatttatgggt 362  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||||| ||||||||||||  ||| |||||||| ||||||||||||||||||||||     
T  923420 caatgatgacaaatatgt-tcacatgttt--tttttatgtttattagtgataaatatatgtccggtgcttttatgtgtaaatgaaaatatatttatgggg 923516  T
Q  363 ttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgtt 462  Q
    | ||||| | ||| ||| || |||  || || |||||| ||||  ||||||| |||| || |||| |||||||||| | ||||  ||||||| |||||||    
T  923517 tccagat-atcgtcgatgaaccgc--caccacctgtcccttcatcgtcttggcgtgtcttaattccattgtggtcattagtttcattcaacgtcgtcgtt 923613  T
Q  463 gtcttgtagagatctgg 479  Q
    ||| ||||||| |||||    
T  923614 gtcatgtagagctctgg 923630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 337
Target Start/End: Complemental strand, 42773219 - 42773176
Alignment:
Q  294 tttttatgtttattagtggtaaatatatgtcacgtgtttttatg 337  Q
    |||||||||||||||||| |||||||||||| | ||||||||||    
T  42773219 tttttatgtttattagtgataaatatatgtctcatgtttttatg 42773176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 270 - 454
Target Start/End: Complemental strand, 16180990 - 16180807
Alignment:
Q  270 gacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatgggtttcaga 368  Q
    ||||||||||||||||||||||  |||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| | |  ||||||||||||    
T  16180990 gacaaatatgtgtcacatgttt--tttttatgtttattagtgataaatatatgtcccgtgtttttatgtataaatgaaaaatgtgtagatgggtttcaga 16180893  T
Q  369 tcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacg 454  Q
    ||  ||| ||| ||||  ||    |  |||||||||| | | |||||||||||||||||  ||||||||||| |||| ||||||||    
T  16180892 tcgtcgtcgatgaagcatcgtcgtaggtgtcctttcacaattttggtgtgtgttgattccgttgtggtcactagtttcgttcaacg 16180807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 293 - 358
Target Start/End: Original strand, 9004840 - 9004906
Alignment:
Q  293 ttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatga-aaatatatttat 358  Q
    |||||||||| |||||||| |||||||||||||| |||||||||| |||||||| ||||||||||||    
T  9004840 ttttttatgtctattagtgataaatatatgtcacttgtttttatgcataaatgagaaatatatttat 9004906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 470
Target Start/End: Complemental strand, 32538546 - 32538367
Alignment:
Q  294 tttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaa---atatatttatgggtttcagatcaccgttgattaagcgccgca 390  Q
    ||||||||||||||||||   || ||||||| |||||||||||| ||||| ||||   |||| ||| || |||| |||||| ||| | | ||||| |||     
T  32538546 tttttatgtttattagtgaagaacatatgtctcgtgtttttatgcataaaagaaaaatatatttttgtgagttttagatcatcgtcggtgaagcgtcgcc 32538447  T
Q  391 acaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttgtcttgta 470  Q
     | ||| |||| ||| ||||||||| || ||||||| | || |||||| ||||||  ||||||  |||||||||||||||    
T  32538446 ccgactatcctctcacagtcttggtttgagttgattatgttatggtcattggtttcattcaacatcgtcgttgtcttgta 32538367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 30739538 - 30739566
Alignment:
Q  100 actagtgtgttaacccgtgcaatgcacgg 128  Q
    |||||||||||||||||||||||||||||    
T  30739538 actagtgtgttaacccgtgcaatgcacgg 30739566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 7159 - 7122
Alignment:
Q  100 actagtgtgttaacccgtgcaatgcacgggtgatagac 137  Q
    |||||||||||||| |||||||||||||||||||||||    
T  7159 actagtgtgttaactcgtgcaatgcacgggtgatagac 7122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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