View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15473_low_2 (Length: 379)
Name: NF15473_low_2
Description: NF15473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15473_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 38998173 - 38998519
Alignment:
| Q |
18 |
cctttatctgtcagcgttgcaacatcacataagatgggaagtaaatactccaacggcacaacaataagcattgtttcgaacttgtagtatcttgttactt |
117 |
Q |
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| T |
38998173 |
cctttatctgtcagcgttgcaacatcacataagatgggaagtaaatactccaacggcacaacaataagcattgtttcgaacttgtagtatcttgttactt |
38998272 |
T |
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| Q |
118 |
ttgcggaagttcaagaaggtacaaacaattttgatgagagttgggttatagttggggtaggtggttttgggaaagtatacaagcgagacttaagggatgg |
217 |
Q |
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| T |
38998273 |
ttgcggaagttcaagaaggtacaaacaattttgatgagagttgggttatagttggggtaggtggttttgggaaagtatacaagcgagacttaagggatgg |
38998372 |
T |
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| Q |
218 |
caggaaagtggcagtgaaaagggggaatccgcgattgctgcaggggattgcggaatttagagctgaaattgaaatgttgtctcagttccgtcatcgtcat |
317 |
Q |
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| T |
38998373 |
caggaaagtggcagtgaaaagggggaatccgcgattgctgcaggggattgcggaatttagagctgaaattgaaatgttgtctcagttccgtcatcgtcat |
38998472 |
T |
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| Q |
318 |
ttggtgtctttgattggttactcactgtgatgaacaacatagtataa |
364 |
Q |
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| T |
38998473 |
ttggtgtctttgattggttactcactgtgatgaacaacatagtataa |
38998519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 35 - 337
Target Start/End: Complemental strand, 41049228 - 41048929
Alignment:
| Q |
35 |
tgcaacatcacataagatgggaagtaaatactccaacggcacaacaataagcattgtttcgaacttgtagtatcttgttacttttgcggaagttcaagaa |
134 |
Q |
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| T |
41049228 |
tgcaacatcccatacaatgggaagtaaatattccaatggcacgacaataagcgctgcttcgaacttcgagtaccgtgtcccttttgcggaagttcaggag |
41049129 |
T |
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| Q |
135 |
ggtacaaacaattttgatgagagttgggttatagttggggtaggtggttttgggaaagtatacaagcgagacttaagggatggcaggaaagtggcagtga |
234 |
Q |
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| T |
41049128 |
ggtacaaataattttgatgagagttgggttat---tggggttggtggttttgggaaagtatacaagggagagttaagggatggtagaaaagtggcagtga |
41049032 |
T |
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| Q |
235 |
aaagggggaatccgcgattgctgcaggggattgcggaatttagagctgaaattgaaatgttgtctcagttccgtcatcgtcatttggtgtctttgattgg |
334 |
Q |
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| T |
41049031 |
agagggggaatccgcggtcccagcaagggattgctgaatttagaactgaaattgaaatgttgtctcagttccgtcatcgtcatttggtgtccttgattgg |
41048932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 41041718 - 41041604
Alignment:
| Q |
40 |
catcacataagatgggaagtaaatactccaacggcacaacaataagcattgtttcgaacttgtagtatcttgttacttttgcggaagttcaagaaggtac |
139 |
Q |
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| T |
41041718 |
catcacatacgatgggaagtaaatactccaacggcacaacaataagtgttgatttgaacttgcagtatcgtgttccttttgcagaagttcaagagagtac |
41041619 |
T |
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| Q |
140 |
aaacaattttgatga |
154 |
Q |
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| T |
41041618 |
taacaattttgatga |
41041604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 330
Target Start/End: Complemental strand, 41041537 - 41041463
Alignment:
| Q |
256 |
tgcaggggattgcggaatttagagctgaaattgaaatgttgtctcagttccgtcatcgtcatttggtgtctttga |
330 |
Q |
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| T |
41041537 |
tgcaggggattgctgaatttcgagttgaaattgaaatgttgtctcagttccaccatcggcatcaggtgtctttga |
41041463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 313
Target Start/End: Complemental strand, 22901934 - 22901739
Alignment:
| Q |
115 |
cttttgcggaagttcaagaaggtacaaacaattttgatgagagttgggttatagttggggtaggtggttttgggaaagtatacaagcgagacttaaggga |
214 |
Q |
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||||||||| |||||| || | |||||||||||||||||||||||||||| | || |||||||||||||| || |||||||| | || ||||| || |
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| T |
22901934 |
cttttgcggtagttcaggaggcaacaaacaattttgatgagagttgggtta---tcggcgtaggtggttttggtaaggtatacaaaggtgaattaagcga |
22901838 |
T |
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| Q |
215 |
tggcaggaaagtggcagtgaaaagggggaatccgcgattgctgcaggggattgcggaatttagagctgaaattgaaatgttgtctcagttccgtcatcg |
313 |
Q |
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| T |
22901837 |
tggaactaaagttgcttgtaagagggggaaccctcggtcgcatcagggacttgcagagttccgaactgaaattgaaatgttgtctcagttccgtcatcg |
22901739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 313
Target Start/End: Complemental strand, 22953602 - 22953407
Alignment:
| Q |
115 |
cttttgcggaagttcaagaaggtacaaacaattttgatgagagttgggttatagttggggtaggtggttttgggaaagtatacaagcgagacttaaggga |
214 |
Q |
| |
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||||||||| |||||| || | |||||||||||||||||||||||||||| | || |||||||||||||| || |||||||| | || ||||| || |
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| T |
22953602 |
cttttgcggtagttcaggaggcaacaaacaattttgatgagagttgggtta---tcggcgtaggtggttttggtaaggtatacaaaggtgaattaagcga |
22953506 |
T |
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| Q |
215 |
tggcaggaaagtggcagtgaaaagggggaatccgcgattgctgcaggggattgcggaatttagagctgaaattgaaatgttgtctcagttccgtcatcg |
313 |
Q |
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| T |
22953505 |
tggaactaaagttgcttgtaagagggggaaccctcggtcgcatcagggacttgcagagttccgaactgaaattgaaatgttgtctcagttccgtcatcg |
22953407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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