View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15473_low_3 (Length: 312)
Name: NF15473_low_3
Description: NF15473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15473_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 115 - 294
Target Start/End: Original strand, 8341026 - 8341204
Alignment:
| Q |
115 |
cgtgggtttttggttgtgtttgattaatccagtctttactcaatttattctacttatttttaataataactatgggttaatttggtattcattccattac |
214 |
Q |
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| T |
8341026 |
cgtgggttttcggttgtgtttgattaatccagtctttactcaatttattctacttatatttaataataacaataggttaatc-ggtattcatttcattcc |
8341124 |
T |
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| Q |
215 |
accactttccaccaatccaaacataacttagatatttttagggtgtaactatgaaaagttcaaaacaaaattaagtgtag |
294 |
Q |
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| T |
8341125 |
accactttccaccaatccaaacatagcttagatatttttattgtgtaactatgaaaagttcaaaacaaaattaagtgtag |
8341204 |
T |
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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 204 - 294
Target Start/End: Original strand, 8332666 - 8332756
Alignment:
| Q |
204 |
cattccattacaccactttccaccaatccaaacataacttagatatttttagggtgtaactatgaaaagttcaaaacaaaattaagtgtag |
294 |
Q |
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| T |
8332666 |
cattctattccaccacttgccgccaacccaaacataacctagatatttttatggtgtaactatgaaaagttcaaaacaaaattaagtgtag |
8332756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 8332347 - 8332414
Alignment:
| Q |
115 |
cgtgggtttttggttgtgtttgattaatccagtctttactcaatttattctacttatttttaataataa |
183 |
Q |
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| T |
8332347 |
cgtgggttttctgttgtgtttggataatcc-gtctttactcattttattctacttatttttaataataa |
8332414 |
T |
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