View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15473_low_4 (Length: 280)
Name: NF15473_low_4
Description: NF15473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15473_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 15 - 276
Target Start/End: Original strand, 8321621 - 8321885
Alignment:
| Q |
15 |
aaaaatatataataacgcaaatgttaaatccgtttcactcaacccatgtttgatgggtttgaccaagtattataattnnnnnnnn----taaaccattat |
110 |
Q |
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| T |
8321621 |
aaaaatatataataacgcaaatgttaaatccgtttcactcaacccttgttggatgggtttgaccaagtattatatttaaaaaaaaaaaataaaccattat |
8321720 |
T |
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| Q |
111 |
taataataaatcatttatatttaatcagtatgacgaaagtgataatannnnnnnnccttcggccatcgaagcttcaatgagaacagtctaacaaactacg |
210 |
Q |
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| T |
8321721 |
taataataaatcatttatatttaatcagtatgacgaaagtgataatattttttt-ccttcggccatcgaagcttcaatgagaacagtctaacaaactacg |
8321819 |
T |
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| Q |
211 |
ttaataatttgttctcacaaatatgaagtcataatgaataatttatctagaagtcaccctatgctt |
276 |
Q |
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| T |
8321820 |
ttaataatttgttctcacaaatatgaagtcataatgaataatatatctagaagtcaccctctgctt |
8321885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 8320559 - 8320629
Alignment:
| Q |
172 |
gccatcgaagcttcaatgagaacagtctaacaaactacgttaataatttgttctcacaaatatgaagtcat |
242 |
Q |
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| T |
8320559 |
gccaacgaagtttcattgagaacagtctaacaaaccaagtaaatattttattgtcacaaataggaagtcat |
8320629 |
T |
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