View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15474_high_13 (Length: 334)
Name: NF15474_high_13
Description: NF15474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15474_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 43802427 - 43802099
Alignment:
| Q |
1 |
aagtggtcccggagggtataatcttaaggtctccatgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttcttcgcccca |
100 |
Q |
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| T |
43802427 |
aagtggtcccggagggtataatcttaaggtctccatgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttgttcgcccca |
43802328 |
T |
|
| Q |
101 |
accacgttatctagctcttgttggagatttttcatcactcttggatgcctcatgagctctgataaagcccactccacaactgttacggaagtttcaaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
43802327 |
accacgttatctagctcttgttggagatttttcatcactcttggatgcctcatgagctctgataaagcccactccacaaccgttgcggaagtttcaaatg |
43802228 |
T |
|
| Q |
201 |
ccccggcaatcatgtctagggatatagcctttatgtttgttcgatcaacgacatgggttttttcgtcagagagatcgatcggttggtgcatcagtgagag |
300 |
Q |
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| T |
43802227 |
ccccggcaatcatgtctagggatatagcctttatgtttgttcgatcaacgacatgggttttttcgtcagagggatcgatcggttggtgcatcagtgagag |
43802128 |
T |
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| Q |
301 |
tagaatgtctacgaaatccctatgcttct |
329 |
Q |
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| T |
43802127 |
tagaatgtctacgaagtccttatgcttct |
43802099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 43812996 - 43812686
Alignment:
| Q |
1 |
aagtggtcccggagggtataatcttaaggtctccatgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttcttcgcccca |
100 |
Q |
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|
||||||||| | ||| |||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| || || |||||||| ||| |||| |
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| T |
43812996 |
aagtggtcctgcaggatataatcttaaggtctccatgatcacaatatctaagtaacttaactttgccatatcattctcctccactaatttgttcatccca |
43812897 |
T |
|
| Q |
101 |
accacgttatctagctcttgttggagatttttcatcactcttggatgcctcatgagctctgataaagcccactccacaactgttacggaagtttcaaatg |
200 |
Q |
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|| || |||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| | ||||| ||||||| |
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| T |
43812896 |
actacactatccagctcttgttggagatttttcattactcttggatgcctcatgagctcggataaagcccactccacaatggttgcagaagtgtcaaatg |
43812797 |
T |
|
| Q |
201 |
ccccggcaatcatgtctagggatatagcctttatgtttgttcgatcaacgacatgggttttttcgtcagagagatcgatcggttggtgcatcagtgagag |
300 |
Q |
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|| |||| |||||||||| || |||||||||||||||||||||||||| ||||||| ||| |||||||||| |||| |||| |||||| |||||||||| |
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| T |
43812796 |
ccgcggcgatcatgtctaaggctatagcctttatgtttgttcgatcaatgacatggctttgttcgtcagagggatcaatcgtctggtgcgtcagtgagag |
43812697 |
T |
|
| Q |
301 |
tagaatgtcta |
311 |
Q |
| |
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||||||||||| |
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| T |
43812696 |
tagaatgtcta |
43812686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 29944776 - 29944727
Alignment:
| Q |
125 |
agatttttcatcactcttggatgcctcatgagctctgataaagcccactc |
174 |
Q |
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|||||||||||||||||||||||||| | || || |||||||||||||| |
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| T |
29944776 |
agatttttcatcactcttggatgccttaaaagttcggataaagcccactc |
29944727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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