View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15474_high_17 (Length: 319)
Name: NF15474_high_17
Description: NF15474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15474_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 316
Target Start/End: Original strand, 43623999 - 43624315
Alignment:
| Q |
8 |
gagcagagagcaaacacaaaaagcctcacaagacttggaacaggcatccggttaaaatgagctacgtgtggaatgtggattatatatgttttttggatta |
107 |
Q |
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| T |
43623999 |
gagcagagagcaaacacaaaaagcctcacaagacttggaacaggcatccagttaaaatgagctacgtgtggaatgtggattatatatgttttttggatta |
43624098 |
T |
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| Q |
108 |
aaagaaattgtaaaaaatatatatgatcgtggattttatccc--------atatatatatttcataagtataactcagataatgtttcataaacatttaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| ||||| ||||||||||||| |
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| T |
43624099 |
aaagaaattgtaaaaaatatatatgatcgtggatattatcccatatatatatatatatatttcataagtacaactcagatgatgttgcataaacatttaa |
43624198 |
T |
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| Q |
200 |
tatgttgtagactatattgaaattatttctccatgcatgatatgtgcgtttcgttgaacgcttaagnnnnnnntttgcctacaatttataggtcataaac |
299 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
43624199 |
tatgttgtagactatattgaaattatttctcaatgcatgatatatgcgtttcgttgaacgcctaagaaaaaattttgcctacaatttataggtcataaac |
43624298 |
T |
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| Q |
300 |
tcattgcgtttaagccc |
316 |
Q |
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||| |||| |||||||| |
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| T |
43624299 |
tcactgcgcttaagccc |
43624315 |
T |
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