View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15474_high_18 (Length: 318)
Name: NF15474_high_18
Description: NF15474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15474_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 26992811 - 26993117
Alignment:
| Q |
11 |
agcagagaatagcaatttcgtccaacctaccatacctagatttgatagtccattatgatcattggtctatgttgatggaaaagcgcttgagatcgaaaga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26992811 |
agcagagaatagcaatttcgtccaacctaccatacctagatttgatagtccattatgatcattggtctatgttgatggaaaagcgcttgagatcgaaaga |
26992910 |
T |
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| Q |
111 |
gtattggagcttggtggagagcgggattccaaaagtagtcgtgggagttaaaccaattgcgcttggcttgcttctctttcctccttggcatttggtttgc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26992911 |
gtattggagcttggtggagagcgggattccaaaagtagtcgtgggagttaaaccaattgcgcttggcttgcttctctttcctccttggcatttggtttgc |
26993010 |
T |
|
| Q |
211 |
aaaaattttggagtacttgttcactttcttttatgtatagtctcagatttctatcacacataataatcacttcttcccataacatgagtaaccgtttcat |
310 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26993011 |
aaaaattttggagtatttgttcactttcttttatgcatagtctcagatttctatcatgcataataatcacttcttcccattacatgagtaaccgtttcat |
26993110 |
T |
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| Q |
311 |
tctctct |
317 |
Q |
| |
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||||||| |
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| T |
26993111 |
tctctct |
26993117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 1755524 - 1755394
Alignment:
| Q |
11 |
agcagagaatagcaatttcgtccaacctaccatacctagatttgatagtccattatgatcattggtctatgttgatggaaaagcgcttgagatcgaaaga |
110 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||| ||| | ||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
1755524 |
agcagagaatagcaatttcgtccaacctgccataccttgatttgatggtc-actatgatcattggtctatgttgatggaaaatctcttgagatcgaaaga |
1755426 |
T |
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| Q |
111 |
gtattggagcttggtggagagcgggattccaa |
142 |
Q |
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||||||||||||||||||||||| |||||||| |
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| T |
1755425 |
gtattggagcttggtggagagcgagattccaa |
1755394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 12793831 - 12793938
Alignment:
| Q |
14 |
agagaatagcaatttcgtccaacctaccatacctagatttgatagtccattatgatcattggtctatgttgatggaaaagcgcttgagatcgaaagagta |
113 |
Q |
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|||||||| |||||| || |||||| ||||||||||||| ||| ||| ||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
12793831 |
agagaataacaattttgttcaacctgccatacctagattcgatggtc-attatgatcattggtctatgttgatggaaaatctcttgagatcgaaagagta |
12793929 |
T |
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| Q |
114 |
ttggagctt |
122 |
Q |
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|||||||| |
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| T |
12793930 |
ctggagctt |
12793938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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