View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15474_high_1_N (Length: 591)
Name: NF15474_high_1_N
Description: NF15474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15474_high_1_N |
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Alignment Details
Target: chr7 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 23 - 561
Target Start/End: Complemental strand, 47117128 - 47116595
Alignment:
| Q |
23 |
gacatcatcaccggcgaagatggtgatgttggcgttcccgttgagctttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaaa |
122 |
Q |
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| T |
47117128 |
gacatcatcaccggtgaagacggtgatgttggcgttcccgttgagctttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaaa |
47117029 |
T |
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| Q |
123 |
aataatcgttaaaaggtgatcgatcgagtcattgatacgttgatattgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctcctt |
222 |
Q |
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| T |
47117028 |
aataatcgttaaaaggtgatcga----gtcattgatacgttgatattgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctcctt |
47116933 |
T |
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| Q |
223 |
gaattgaaactaaagatataaaagaaattggttattgaatatctttgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtca |
322 |
Q |
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| T |
47116932 |
gaattgaaactaaagatataaaagaaattggttattgaatatctttgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtca |
47116833 |
T |
|
| Q |
323 |
gnnnnnnngagatatcataaggaaatgaaataacaagggtatgaggaagcttggagtggtgtccatctattgtggaaggattggggattcgttcattaac |
422 |
Q |
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| T |
47116832 |
gaaaaaaagagatatcataaggaaatgaaataacaagggtatgaggaagcttggagtggtgtccatctattgtggaaggattggggattcgttcattaac |
47116733 |
T |
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| Q |
423 |
ataacatcattgaactgagatgtatgacgtggaaattttctttgtaactgtctccccgaactttcagtaattaataccacaattagcacaaataatttct |
522 |
Q |
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| T |
47116732 |
ataacatcattgaa-tgagatgtatgacgtggaacttttctttgtaactgtctccccgaactttcagtaattaataccacaattagcacaaataatttct |
47116634 |
T |
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| Q |
523 |
ttcattttctctttccttaccagttttccaccaaataat |
561 |
Q |
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| T |
47116633 |
ttcattttctctttccttaccagttttccaccaaataat |
47116595 |
T |
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