View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15474_high_6 (Length: 366)
Name: NF15474_high_6
Description: NF15474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15474_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 27 - 332
Target Start/End: Original strand, 6315042 - 6315347
Alignment:
| Q |
27 |
tcatcatgtgcagagtttatttttactgtcatcaacaactgcacaacaatgattatgaatggtttaactatggtgttgtggaatatatggaagagaagaa |
126 |
Q |
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| T |
6315042 |
tcatcatgtgcagaatttatttttactgtcatcaacaactgcacaacaatgattatgaatggtttaactatggtgttgtggaatatatggaagagaagaa |
6315141 |
T |
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| Q |
127 |
gtaagcagctttggaatatgcctggcaacaatccaacaagctatttagttccctgttgttttgaaatggcaaaagaaaaagcagcaaaatacttagaatt |
226 |
Q |
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| T |
6315142 |
gtaagcagctttggaatatgcctggcaacaatccaacaagctatttagttccctgttgttttgaaatggcaaaagaaaaagcagcaaaatacttagaatt |
6315241 |
T |
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| Q |
227 |
tggagattaacacgaggcatatagtagatggaaaaaaccacaacaggggtacttgtcatatggcaacaggtggattagtagcaacggagacttgttgggc |
326 |
Q |
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| T |
6315242 |
tggagattaacacgaggcatatagtagatggaaaagaccacaacaggggtacttgtcatatggcaacaggtggattagtagcaacggagacttgttgggc |
6315341 |
T |
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| Q |
327 |
agatgg |
332 |
Q |
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|||||| |
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| T |
6315342 |
agatgg |
6315347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 6318172 - 6318236
Alignment:
| Q |
27 |
tcatcatgtgcagag--tttatttttactgtcatcaacaactgcacaacaatgattatgaatggt |
89 |
Q |
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|||||||||| |||| |||| ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
6318172 |
tcatcatgtggagagaatttaattttactgtcatcaacagctgcacaacaaggattatgaatggt |
6318236 |
T |
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