View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15474_low_1 (Length: 283)

Name: NF15474_low_1
Description: NF15474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15474_low_1
NF15474_low_1
[»] chr2 (14 HSPs)
chr2 (1-127)||(1895402-1895528)
chr2 (12-127)||(17281959-17282075)
chr2 (1-127)||(1551602-1551728)
chr2 (14-127)||(3921584-3921697)
chr2 (1-125)||(17375271-17375395)
chr2 (204-275)||(1895254-1895325)
chr2 (208-269)||(1551809-1551870)
chr2 (210-267)||(17282158-17282215)
chr2 (54-127)||(34660278-34660351)
chr2 (208-267)||(3921444-3921503)
chr2 (208-265)||(17375153-17375210)
chr2 (208-267)||(4869507-4869566)
chr2 (54-127)||(4869637-4869710)
chr2 (214-266)||(14950835-14950887)
[»] chr6 (5 HSPs)
chr6 (5-127)||(20740570-20740692)
chr6 (1-127)||(21881459-21881585)
chr6 (204-269)||(20740453-20740518)
chr6 (208-267)||(21881318-21881377)
chr6 (214-266)||(32747716-32747768)
[»] chr4 (17 HSPs)
chr4 (12-130)||(47518466-47518584)
chr4 (1-127)||(53202258-53202384)
chr4 (36-127)||(34227057-34227148)
chr4 (208-267)||(53202118-53202177)
chr4 (1-127)||(23054238-23054363)
chr4 (208-267)||(47518662-47518721)
chr4 (204-272)||(23054441-23054508)
chr4 (208-269)||(34227204-34227265)
chr4 (1-105)||(6410005-6410109)
chr4 (57-122)||(12469342-12469407)
chr4 (214-266)||(45873102-45873154)
chr4 (220-263)||(12489216-12489259)
chr4 (57-105)||(12466698-12466746)
chr4 (214-266)||(14441115-14441167)
chr4 (214-264)||(12130516-12130566)
chr4 (214-266)||(38093215-38093267)
chr4 (214-266)||(55728692-55728744)
[»] chr5 (20 HSPs)
chr5 (1-130)||(18696922-18697051)
chr5 (17-104)||(41355543-41355630)
chr5 (12-127)||(7767020-7767135)
chr5 (204-267)||(38958379-38958442)
chr5 (1-127)||(27170093-27170219)
chr5 (208-263)||(41355722-41355777)
chr5 (56-127)||(38958230-38958301)
chr5 (61-127)||(7271826-7271892)
chr5 (54-127)||(6030388-6030461)
chr5 (208-267)||(7271708-7271767)
chr5 (208-262)||(27170275-27170329)
chr5 (214-266)||(26331217-26331269)
chr5 (208-267)||(26656630-26656688)
chr5 (208-267)||(26928217-26928275)
chr5 (208-263)||(40599985-40600040)
chr5 (228-266)||(42221388-42221426)
chr5 (208-263)||(7767203-7767255)
chr5 (214-266)||(24867205-24867257)
chr5 (54-104)||(26656780-26656830)
chr5 (54-104)||(26928367-26928417)
[»] chr8 (8 HSPs)
chr8 (1-127)||(5994622-5994748)
chr8 (4-130)||(10408814-10408940)
chr8 (14-127)||(6444027-6444140)
chr8 (214-266)||(5994485-5994537)
chr8 (208-267)||(10408702-10408761)
chr8 (214-266)||(15050162-15050214)
chr8 (219-263)||(3763045-3763089)
chr8 (214-266)||(25142902-25142954)
[»] chr1 (13 HSPs)
chr1 (14-130)||(34654967-34655083)
chr1 (1-100)||(34117991-34118090)
chr1 (208-267)||(34654830-34654889)
chr1 (16-126)||(26236671-26236781)
chr1 (14-104)||(39709015-39709105)
chr1 (54-127)||(615753-615826)
chr1 (204-267)||(39709180-39709243)
chr1 (209-269)||(34117896-34117955)
chr1 (1-104)||(11407989-11408092)
chr1 (208-261)||(615638-615691)
chr1 (214-263)||(11814695-11814744)
chr1 (214-262)||(2077483-2077531)
chr1 (214-266)||(14351174-14351226)
[»] chr7 (4 HSPs)
chr7 (208-267)||(11698554-11698613)
chr7 (208-267)||(3302427-3302486)
chr7 (1-127)||(3302567-3302693)
chr7 (214-266)||(31039000-31039052)
[»] chr3 (5 HSPs)
chr3 (54-127)||(18269763-18269836)
chr3 (208-267)||(43275830-43275890)
chr3 (220-272)||(18269919-18269971)
chr3 (214-263)||(31699221-31699270)
chr3 (53-99)||(43275999-43276045)
[»] scaffold0157 (1 HSPs)
scaffold0157 (220-263)||(31218-31261)
[»] scaffold0027 (1 HSPs)
scaffold0027 (214-266)||(2938-2989)


Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 1895528 - 1895402
Alignment:
Q  1 gatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatgg 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1895528 gatcggtcatgatggtggtgatgagtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttggtttgtggtacttcatgg 1895429  T
Q  101 tggttttcttggtggtactgattttgg 127  Q
    ||||||||||||||||| |||||||||    
T  1895428 tggttttcttggtggtattgattttgg 1895402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 17281959 - 17282075
Alignment:
Q  12 atggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttag-tttgtggtacttcatggtggttttctt 110  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  17281959 atggtggtgatggatcatatctaggtttgcttatgaacttatatggtttcgatggatctttggttgtgttggttttgtggtacttcatggtggttttctt 17282058  T
Q  111 ggtggtactgattttgg 127  Q
    |||||| ||||||||||    
T  17282059 ggtggtgctgattttgg 17282075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 1551602 - 1551728
Alignment:
Q  1 gatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatgg 100  Q
    |||| |||| |||||||||||||| |||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||    
T  1551602 gatcagtcacgatggtggtgatggatcatgtataggttcgcttatgaacttatatagtttcgatggatctttggttgtgttggtttgtggtacttcgtgg 1551701  T
Q  101 tggttttcttggtggtactgattttgg 127  Q
    ||||||||||||| || ||||||||||    
T  1551702 tggttttcttggtagtgctgattttgg 1551728  T

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Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 3921697 - 3921584
Alignment:
Q  14 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggt 113  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| |||||||||||||||    
T  3921697 ggtggtgatggatcatatctaagttcgcttatgaacttatatggttttgatggatgtttggttgtgttggtttgtggtacttcacggtggttttcttggt 3921598  T
Q  114 ggtactgattttgg 127  Q
    ||| ||||||||||    
T  3921597 ggtgctgattttgg 3921584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 17375395 - 17375271
Alignment:
Q  1 gatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatgg 100  Q
    ||||| ||| |||||||||||||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| ||||||||| |||||||     
T  17375395 gatcgatcacgatggtggtgatggatcatatctaggttcgcttatgaactgttatggtttcgatgaatctttggttgtgttggtttgtggtgcttcatga 17375296  T
Q  101 tggttttcttggtggtactgatttt 125  Q
      |||||| ||||||| ||||||||    
T  17375295 cagttttcatggtggtgctgatttt 17375271  T

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Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 1895325 - 1895254
Alignment:
Q  204 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatgatg 275  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  1895325 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtgttcaatggtagttttggtgatggtgatg 1895254  T

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Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 1551809 - 1551870
Alignment:
Q  208 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 269  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1551809 tgttgcttttaggtgagggttaatggtgatttttgaggtggtcaatggtagttttggtgatg 1551870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 17282158 - 17282215
Alignment:
Q  210 ttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17282158 ttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtaggtttggtga 17282215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 34660351 - 34660278
Alignment:
Q  54 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 127  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||| ||||||||||    
T  34660351 atggtttcgatggatctttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctgattttgg 34660278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 3921503 - 3921444
Alignment:
Q  208 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 267  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  3921503 tgttgcttttaggtgagggttaatggtgatttttgtggtggtaaatagtagttttggtga 3921444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 265
Target Start/End: Complemental strand, 17375210 - 17375153
Alignment:
Q  208 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggt 265  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||    
T  17375210 tgttgctttttggtgagggttaattgtggtttttgtggtggtcaatggtagttttggt 17375153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 4869566 - 4869507
Alignment:
Q  208 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 267  Q
    ||||||||||  |||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  4869566 tgttgctttttagtgatggttaatggtggtttttgtggtggtcaatggtagtttttgtga 4869507  T

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Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 4869710 - 4869637
Alignment:
Q  54 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 127  Q
    ||||||| ||||||||||||||||| || ||||| ||| |||||||| ||||||| || |||| ||||||||||    
T  4869710 atggttttgatggatctttggttgttttggtttgcggtgcttcatggcggttttcatgatggtgctgattttgg 4869637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 14950835 - 14950887
Alignment:
Q  214 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 266  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  14950835 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 14950887  T

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Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 20740692 - 20740570
Alignment:
Q  5 ggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 104  Q
    ||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  20740692 ggtcacgatggtggtgatggatcatatctaggttcggttatgaacttatatggtttcgatggatctttggttgtgttggtttatggtacttcatggtggt 20740593  T
Q  105 tttcttggtggtactgattttgg 127  Q
    |||||||||||| ||||||||||    
T  20740592 tttcttggtggtgctgattttgg 20740570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 21881585 - 21881459
Alignment:
Q  1 gatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatgg 100  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||  ||||||||||||| |||||||||| |||| ||||||||| ||||||||    
T  21881585 gatcggtcacgatggtggtgatggatcatatctaggttcgcttatgaactgctatggtttcgatgaatctttggttatgttggtttgtggtgcttcatgg 21881486  T
Q  101 tggttttcttggtggtactgattttgg 127  Q
      ||| || ||||||| ||||||||||    
T  21881485 cagttatcatggtggtgctgattttgg 21881459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 20740518 - 20740453
Alignment:
Q  204 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 269  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20740518 ctgatgttgcttttaggtgaaggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 20740453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 21881377 - 21881318
Alignment:
Q  208 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 267  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  21881377 tgttgctttttggtgagggttaatcgtgatttttgtggtggtcaatgctagttttggtga 21881318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 32747716 - 32747768
Alignment:
Q  214 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 266  Q
    |||| |||||||  |||||||| ||||||||||||| ||||||||||||||||    
T  32747716 tttttggtgaggtgtaatggtggtttttgtggtggttaatggtagttttggtg 32747768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 47518466 - 47518584
Alignment:
Q  12 atggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttg 111  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  47518466 atggtggtgatgaatcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttcgtttgtggtacttcatggtggttttcttg 47518565  T
Q  112 gtggtactgattttggatc 130  Q
    ||| | |||||||||||||    
T  47518566 gtgttgctgattttggatc 47518584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 53202384 - 53202258
Alignment:
Q  1 gatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatgg 100  Q
    ||||||||| |||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||     
T  53202384 gatcggtcacgatggtggtgatgaatcatatctagattcgcttatgaacttatatggtttcgatggatctttggttgtattggtttgtggtacttcatga 53202285  T
Q  101 tggttttcttggtggtactgattttgg 127  Q
    ||||||||||||||||  |||||||||    
T  53202284 tggttttcttggtggtgttgattttgg 53202258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 36 - 127
Target Start/End: Original strand, 34227057 - 34227148
Alignment:
Q  36 gttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 127  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| |||||||||||| ||||||||||    
T  34227057 gttcgcttatgaacttatatggtttcaatggatctttggttgtgttggtctgtggtacttcatggtggctttcttggtggtgctgattttgg 34227148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 53202177 - 53202118
Alignment:
Q  208 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53202177 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 53202118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 23054238 - 23054363
Alignment:
Q  1 gatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatgg 100  Q
    |||| |||| ||||||| || ||| |||||||| ||||||||||||||||  ||||||||| ||||||||||||||||||| ||| ||||| ||| ||||    
T  23054238 gatcagtcacgatggtg-tgctggatcatatctcggttcgcttatgaactgttatggtttcaatggatctttggttgtgttggttcgtggtgctttatgg 23054336  T
Q  101 tggttttcttggtggtactgattttgg 127  Q
     ||||||| ||||||| ||||||||||    
T  23054337 cggttttcatggtggtgctgattttgg 23054363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 47518662 - 47518721
Alignment:
Q  208 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 267  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47518662 tgttgcttttaggtgagggttaatagtgatttttgtggtggtcaatggtagttttggtga 47518721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 23054441 - 23054508
Alignment:
Q  204 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatg 272  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||    
T  23054441 ctgatgttgcttttaggtgagggttaatggtg-gttttgtggtggtcaatggtagttttggtgacgatg 23054508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 34227204 - 34227265
Alignment:
Q  208 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 269  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||    
T  34227204 tgttgcttttaggtgagggttaatggtggttttcgtgatggtcaatggtagttttagtgatg 34227265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 6410109 - 6410005
Alignment:
Q  1 gatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatgg 100  Q
    ||||||||| || ||||| ||| | ||| ||||  |||||||||||| ||  ||||||||||||| ||||| ||||||||| ||||||||| ||||||||    
T  6410109 gatcggtcacgaaggtggcgatcgatcagatctgagttcgcttatgatctattatggtttcgatgaatcttgggttgtgttggtttgtggtgcttcatgg 6410010  T
Q  101 tggtt 105  Q
    |||||    
T  6410009 tggtt 6410005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 12469342 - 12469407
Alignment:
Q  57 gtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgat 122  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||||||||  | ||||||| |||||    
T  12469342 gtttcgatggatccttggttgtgttggtttgtggtccttcatggtggttaccatggtggtgctgat 12469407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 45873154 - 45873102
Alignment:
Q  214 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 266  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  45873154 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 45873102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 263
Target Start/End: Original strand, 12489216 - 12489259
Alignment:
Q  220 gtgagggttaatggtgatttttgtggtggtcaatggtagttttg 263  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  12489216 gtgatggttaatggtgatttttgtggtggttaatggtagttttg 12489259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 12466698 - 12466746
Alignment:
Q  57 gtttcgatggatctttggttgtgttagtttgtggtacttcatggtggtt 105  Q
    ||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  12466698 gtttcgatggatccttggttatgttggtttgtggtccttcatggtggtt 12466746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 14441167 - 14441115
Alignment:
Q  214 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 266  Q
    |||| ||||||| ||||||||| |||||||| |||| ||||||||||||||||    
T  14441167 tttttggtgaggattaatggtggtttttgtgctggttaatggtagttttggtg 14441115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 12130566 - 12130516
Alignment:
Q  214 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttgg 264  Q
    |||| ||||||| |||||| |  ||||||||||||||||||||||||||||    
T  12130566 tttttggtgaggattaatgatagtttttgtggtggtcaatggtagttttgg 12130516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 38093267 - 38093215
Alignment:
Q  214 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 266  Q
    |||| ||||||| || |||||| ||||||||||||| | ||||||||||||||    
T  38093267 tttttggtgaggatttatggtgttttttgtggtggttattggtagttttggtg 38093215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 55728744 - 55728692
Alignment:
Q  214 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 266  Q
    |||| ||||||| ||||||||| ||||||||||||| |||| || ||||||||    
T  55728744 tttttggtgaggattaatggtggtttttgtggtggttaatgataattttggtg 55728692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 18697051 - 18696922
Alignment:
Q  1 gatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatgg 100  Q
    |||| |||| |||||||||||||| |||||||||||||||||||||||||  ||||| |||| |||||||||||||||||| ||||||||| ||||||||    
T  18697051 gatcagtcacgatggtggtgatggatcatatctaggttcgcttatgaactgttatgggttcggtggatctttggttgtgttggtttgtggtgcttcatgg 18696952  T
Q  101 tggttttcttggtggtactgattttggatc 130  Q
     | ||||| ||||| | |||||||||||||    
T  18696951 cgtttttcatggtgttgctgattttggatc 18696922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 41355543 - 41355630
Alignment:
Q  17 ggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 104  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41355543 ggtgatggatcatatctatgttcgctcatgaacttatatggtttcgatggatctttggttgtgttggtttgtggtacttcatggtggt 41355630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 7767020 - 7767135
Alignment:
Q  12 atggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttg 111  Q
    ||||||||||||| |||||||||||||| |||||||| |  ||||||||||||||||||||||||||||| ||||||||| |||||||| || |||| ||    
T  7767020 atggtggtgatggatcatatctaggttcacttatgaattgttatggtttcgatggatctttggttgtgttggtttgtggtgcttcatggcgggtttcatg 7767119  T
Q  112 gtggtactgattttgg 127  Q
    |||||  |||||||||    
T  7767120 gtggtgttgattttgg 7767135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 38958379 - 38958442
Alignment:
Q  204 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 267  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38958379 ctgacgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 38958442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 27170093 - 27170219
Alignment:
Q  1 gatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatgg 100  Q
    ||||||||| ||||||||| |||| |||||| | | ||  |||| |||||  ||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  27170093 gatcggtcacgatggtggtaatggatcatatttggctttacttacgaactgttatggtttcgatggatctttggttgtgttggtttgtggtgcttcatgg 27170192  T
Q  101 tggttttcttggtggtactgattttgg 127  Q
     ||||||| ||||||| || |||||||    
T  27170193 cggttttcatggtggtgctaattttgg 27170219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 41355722 - 41355777
Alignment:
Q  208 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41355722 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 41355777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 38958230 - 38958301
Alignment:
Q  56 ggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 127  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| |||| ||||||||||    
T  38958230 ggtttcgatggatctttggttgtgttggtttgtgatacttcatggtggtttttttgatggtgctgattttgg 38958301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 7271892 - 7271826
Alignment:
Q  61 cgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 127  Q
    ||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||| ||||||||||    
T  7271892 cgatggatctttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctgattttgg 7271826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 6030388 - 6030461
Alignment:
Q  54 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 127  Q
    |||||||||||||||||||||||||||| ||||||||| |||| ||  ||||||| ||||||| ||||||||||    
T  6030388 atggtttcgatggatctttggttgtgttggtttgtggtgcttcctgacggttttcatggtggtgctgattttgg 6030461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 7271767 - 7271708
Alignment:
Q  208 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 267  Q
    ||||||||||  |||| ||||||||||| ||||||||||||||||||||| |||||||||    
T  7271767 tgttgctttttagtgatggttaatggtggtttttgtggtggtcaatggtacttttggtga 7271708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 27170275 - 27170329
Alignment:
Q  208 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagtttt 262  Q
    |||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||    
T  27170275 tgttgctttttggtgaggattaatggtggtttttgtggtggttaatggtagtttt 27170329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 26331217 - 26331269
Alignment:
Q  214 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 266  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  26331217 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 26331269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 26656688 - 26656630
Alignment:
Q  208 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 267  Q
    ||||||||||  |||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  26656688 tgttgctttttagtgatggttaatggtggtttt-gtggtggtcaatggtagttttggtga 26656630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 26928275 - 26928217
Alignment:
Q  208 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 267  Q
    ||||||||||  |||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  26928275 tgttgctttttagtgatggttaatggtggtttt-gtggtggtcaatggtagttttggtga 26928217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 40599985 - 40600040
Alignment:
Q  208 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 263  Q
    ||||| |||| ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  40599985 tgttgatttttggtgaggattaatggtggtttttgtggtggttaatggtagttttg 40600040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 42221426 - 42221388
Alignment:
Q  228 taatggtgatttttgtggtggtcaatggtagttttggtg 266  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  42221426 taatggtgatttttgtggtggttaatggtagttttggtg 42221388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 7767203 - 7767255
Alignment:
Q  208 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 263  Q
    |||||||||||||||||||||   |||| |||||||||||||||||| ||||||||    
T  7767203 tgttgcttttaggtgagggtt---ggtggtttttgtggtggtcaatgatagttttg 7767255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 24867205 - 24867257
Alignment:
Q  214 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 266  Q
    |||| ||||||| ||||||||| |||||||| |||| ||||||||||||||||    
T  24867205 tttttggtgaggattaatggtggtttttgtgttggttaatggtagttttggtg 24867257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 26656830 - 26656780
Alignment:
Q  54 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 104  Q
    |||||||||| |||||||||||||| || |||| |||| ||||||||||||    
T  26656830 atggtttcgacggatctttggttgtattggtttatggtgcttcatggtggt 26656780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 26928417 - 26928367
Alignment:
Q  54 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 104  Q
    |||||||||| |||||||||||||| || |||| |||| ||||||||||||    
T  26928417 atggtttcgacggatctttggttgtattggtttatggtgcttcatggtggt 26928367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 5994748 - 5994622
Alignment:
Q  1 gatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatgg 100  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  5994748 gatcgatcatgatggtggtgatggatcatatctgggttcgcttatgaactgttatggttttgatggatctttggttgtgttggtttgtggtgcttcatgg 5994649  T
Q  101 tggttttcttggtggtactgattttgg 127  Q
     ||| ||| ||||| |  |||||||||    
T  5994648 cggtattcatggtgatgttgattttgg 5994622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 10408940 - 10408814
Alignment:
Q  4 cggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtgg 103  Q
    |||||| |||||||||||||| ||||||||||||||||||||||  |  ||||||||||||| ||||||||||||||| ||||||||| |||||||| ||    
T  10408940 cggtcacgatggtggtgatggatcatatctaggttcgcttatgatatgttatggtttcgatgaatctttggttgtgttggtttgtggtgcttcatggagg 10408841  T
Q  104 ttttcttggtggtactgattttggatc 130  Q
    ||||  ||||||| || ||||||||||    
T  10408840 ttttaatggtggtgctaattttggatc 10408814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 6444140 - 6444027
Alignment:
Q  14 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggt 113  Q
    ||||||||||| ||| || |  |||||| ||||| ||  ||||||||||| | ||||||| ||||||| |||||||||||||| ||||||||||| ||||    
T  6444140 ggtggtgatggatcagatatgagttcgcctatgagctgttatggtttcgaagaatctttgattgtgttggtttgtggtacttcgtggtggttttcatggt 6444041  T
Q  114 ggtactgattttgg 127  Q
    ||  ||||||||||    
T  6444040 ggggctgattttgg 6444027  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 5994537 - 5994485
Alignment:
Q  214 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 266  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5994537 tttttggtgagggttaatggtgatttttgtggtggttaatggtagttttggtg 5994485  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 10408761 - 10408702
Alignment:
Q  208 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 267  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||    
T  10408761 tgttgcttttaggtgagagttaatggtggtttttgtggtggtcaatggttgttttagtga 10408702  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 15050162 - 15050214
Alignment:
Q  214 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 266  Q
    |||| ||||||| |||||| || ||||||||||||| ||||||||||||||||    
T  15050162 tttttggtgaggattaatgatggtttttgtggtggttaatggtagttttggtg 15050214  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 3763045 - 3763089
Alignment:
Q  219 ggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 263  Q
    ||||||| |||||| || ||||||||||||| |||||||||||||    
T  3763045 ggtgaggattaatgatggtttttgtggtggttaatggtagttttg 3763089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 25142954 - 25142902
Alignment:
Q  214 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 266  Q
    |||| |||||||  || ||||||||||||||||||| |||||||||| |||||    
T  25142954 ttttcggtgaggagtagtggtgatttttgtggtggttaatggtagttgtggtg 25142902  T

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Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 34655083 - 34654967
Alignment:
Q  14 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggt 113  Q
    ||||||||||| ||||||||||||||||||||||| |  |||||||| |||| ||||||| ||||||| ||||||||| |||||||| ||||||| ||||    
T  34655083 ggtggtgatggatcatatctaggttcgcttatgaaatgttatggttttgatgcatctttgattgtgttggtttgtggtgcttcatggcggttttcatggt 34654984  T
Q  114 ggtactgattttggatc 130  Q
    ||| |||||||||||||    
T  34654983 ggtgctgattttggatc 34654967  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 34118090 - 34117991
Alignment:
Q  1 gatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatgg 100  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||  |||||||||  ||||||||||||||||||  |||||||| | ||||||    
T  34118090 gatcggtcacgatggtggtgatggatcatatctaggttcgcttatgaactgttatggtttcagtggatctttggttgtgttgatttgtggtgcctcatgg 34117991  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 34654889 - 34654830
Alignment:
Q  208 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34654889 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 34654830  T

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Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 26236671 - 26236781
Alignment:
Q  16 tggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtgg 115  Q
    ||||||||| ||| |||| ||||| ||||||| ||  ||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||||| || |||    
T  26236671 tggtgatggatcagatctgggttcacttatgacctgttatgggttcgatggatctttggttgcgttggtttgtggtgcttcatggtggttttcatgatgg 26236770  T
Q  116 tactgattttg 126  Q
    | |||||||||    
T  26236771 tgctgattttg 26236781  T

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Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 39709015 - 39709105
Alignment:
Q  14 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 104  Q
    ||||||||||| || ||||| |||||||||| |||||  |||||||| |||||||||||||||||||| ||||||||| ||||||||||||    
T  39709015 ggtggtgatggatcgtatctgggttcgcttaggaactgttatggttttgatggatctttggttgtgttggtttgtggtgcttcatggtggt 39709105  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 615826 - 615753
Alignment:
Q  54 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 127  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||  ||||||| ||||||| |||| |||||    
T  615826 atggttttgatggatctttggttgtgttagtttgtggtgcttcatgacggttttcatggtggtgctgaatttgg 615753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 39709180 - 39709243
Alignment:
Q  204 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 267  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  39709180 ctgatatttctttttggtgagggttaatggtgatttttgtggtggttaatggtagttttcgtga 39709243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 34117955 - 34117896
Alignment:
Q  209 gttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 269  Q
    ||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  34117955 gttgctttt-ggtgagggttaatggtggtttttgtagcggtcaatggtagttttggtgatg 34117896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 11407989 - 11408092
Alignment:
Q  1 gatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatgg 100  Q
    |||||| || || ||||||||||| ||| || | |||| ||||||||  |  |||||||||||   ||||||||||||||| ||||||||| ||||||||    
T  11407989 gatcggccacgaaggtggtgatggatcagatatgggttagcttatgatatgttatggtttcgacaaatctttggttgtgttggtttgtggtgcttcatgg 11408088  T
Q  101 tggt 104  Q
    ||||    
T  11408089 tggt 11408092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 615691 - 615638
Alignment:
Q  208 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttt 261  Q
    ||||||||||  |||| |||||||||||  |||||||| |||||||||||||||    
T  615691 tgttgctttttagtgatggttaatggtgccttttgtggcggtcaatggtagttt 615638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 11814744 - 11814695
Alignment:
Q  214 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 263  Q
    |||| ||||||| ||||||||| |||||||| |||| |||||||||||||    
T  11814744 tttttggtgaggattaatggtggtttttgtgatggttaatggtagttttg 11814695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 2077483 - 2077531
Alignment:
Q  214 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagtttt 262  Q
    |||| ||||||| ||||||||| ||||||||||||| |||| |||||||    
T  2077483 tttttggtgaggattaatggtggtttttgtggtggttaatgatagtttt 2077531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 14351174 - 14351226
Alignment:
Q  214 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 266  Q
    |||| ||||||  ||||||||| ||||||||||||| | ||||||||||||||    
T  14351174 tttttggtgagaattaatggtggtttttgtggtggttagtggtagttttggtg 14351226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 11698554 - 11698613
Alignment:
Q  208 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11698554 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 11698613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 3302486 - 3302427
Alignment:
Q  208 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 267  Q
    |||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||    
T  3302486 tgttgctttttggtgagtgttaatggtggtttttgtggtggtcaatggtagttttggtga 3302427  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 3302693 - 3302567
Alignment:
Q  1 gatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatgg 100  Q
    ||||| ||| ||||||||||||   |||||||||| ||||||||| ||||  ||| |||||||||||||||||||||| || || |||||| |||||||     
T  3302693 gatcgatcacgatggtggtgatacatcatatctagattcgcttattaactgttatagtttcgatggatctttggttgtattggtatgtggtgcttcatga 3302594  T
Q  101 tggttttcttggtggtactgattttgg 127  Q
      |||||| |||||||  |||||||||    
T  3302593 cagttttcatggtggtgttgattttgg 3302567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 31039052 - 31039000
Alignment:
Q  214 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 266  Q
    |||| |||||||  |||||||| ||||||||||||| ||||||||||||||||    
T  31039052 ttttcggtgaggagtaatggtggtttttgtggtggttaatggtagttttggtg 31039000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 18269763 - 18269836
Alignment:
Q  54 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 127  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||  |||||||||    
T  18269763 atggtttcgatggatctttggttgtgttggtttgtggtgcttcatggtggttttcatggtggtgttgattttgg 18269836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 43275890 - 43275830
Alignment:
Q  208 tgttgcttttaggtgagggttaatggtgattttt-gtggtggtcaatggtagttttggtga 267  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  43275890 tgttgctttttggtgagggttaatggtggttttttgtggtggtcaatggtagttttggtga 43275830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 18269919 - 18269971
Alignment:
Q  220 gtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatg 272  Q
    |||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  18269919 gtgatggttaatggtggtttttgtggtggtcaatggaagttttggtgacgatg 18269971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 31699270 - 31699221
Alignment:
Q  214 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 263  Q
    |||| ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  31699270 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttg 31699221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 43276045 - 43275999
Alignment:
Q  53 tatggtttcgatggatctttggttgtgttagtttgtggtacttcatg 99  Q
    |||| |||||||| ||||||||||||||| ||||||||| |||||||    
T  43276045 tatgatttcgatgaatctttggttgtgttggtttgtggtgcttcatg 43275999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 263
Target Start/End: Complemental strand, 31261 - 31218
Alignment:
Q  220 gtgagggttaatggtgatttttgtggtggtcaatggtagttttg 263  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  31261 gtgatggttaatggtgatttttgtggtggttaatggtagttttg 31218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 2989 - 2938
Alignment:
Q  214 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 266  Q
    |||| |||||||  ||||||||||||| |||||||| ||||||||||||||||    
T  2989 tttttggtgaggagtaatggtgatttt-gtggtggttaatggtagttttggtg 2938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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