View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15475_high_9 (Length: 226)
Name: NF15475_high_9
Description: NF15475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15475_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 31536155 - 31535932
Alignment:
| Q |
1 |
atacatttattaccattgcttcattgctcatactatatgtcctggacagaacatctctagtaacaaatgacaaaattcatgtgtttatttaatcttcata |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31536155 |
atacatttattaccattgcttcatggctcatactatatgtcctggacagaacatctctagtaacaaatgacaaaattcatgtgtttatttaatcgtcata |
31536056 |
T |
|
| Q |
101 |
accttaacattaatacaaaaagttaagg-ttattaaattagtggtcattgtctcaattaaaagaagtaacattgatttgtaaaacaaaagacatggacat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31536055 |
accttaacattaatacaaaaagttaaggtttattaaattagtggtcattgtctcaattaaaagaagtaacattgatttgtaaaacaaaagacatggacat |
31535956 |
T |
|
| Q |
200 |
ggccgactgtaccacactcccatt |
223 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
31535955 |
ggccgactgtaccacactcccatt |
31535932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University