View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15475_low_1 (Length: 790)
Name: NF15475_low_1
Description: NF15475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15475_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 600; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 107 - 773
Target Start/End: Complemental strand, 31569465 - 31568797
Alignment:
| Q |
107 |
gttgtgcaaatatcatttctctaaaaagtttaattctatttactaagttatttcaaagnnnnnnn-tgatgcattttccctcgtnnnnnnnn-tatttaa |
204 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| |
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| T |
31569465 |
gttgtgcaaatatcatttctctaaaaagtttaattctatttactaagttatttgaaagaaaaaaaatgatgcattttccctcgtaaaaaaaaatatttaa |
31569366 |
T |
|
| Q |
205 |
ggacttaagcccattaacagttcctacccaataccatgaattgacttctaaaaatatcatcatagactaatcacaaaaaagaactaattttaaaacctta |
304 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31569365 |
ggacttaagcccattaacagttcctacccaataccatgaattgacttctaaaaatatcatcatagactaatcacaaaaaagaactaattttaaaacctta |
31569266 |
T |
|
| Q |
305 |
cccataattcagcgttaccgctatcaaaatttaatcaatatacgtctcaaaaagttacatcctccaaataaatctaaacattgtctttcaccctattttc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31569265 |
cccataattcagcgttaccgctatcaaaatttaatcaatatacgtctcaaaaagttacatcctccaaataaatctaaacattgtctttcaccctattttc |
31569166 |
T |
|
| Q |
405 |
tttgccttcctcttcgtcaattccatggagatcaattaactaattacatattctcttctccatatatatcaagcttgatttgcagaaattaacgtgacat |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31569165 |
tttgccttcctcttcgtcaattccatggagatcaattaactaattacatattctcttctccatatatatcaagcttgatttgcagaaattaacgtgacat |
31569066 |
T |
|
| Q |
505 |
ggctgcagaaactaacgcgaatgttaccagcaggtggatatgtgaacaaatgatcatacatcaaagatcaaaaggaattttctttcatgaaaacccattt |
604 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31569065 |
ggctgcagaaactaacgcgaatgttaccagcaggtggatatgtgaacaaatgatcatacatcaaagatcaaaaggaattttctttcatgaaaacccattt |
31568966 |
T |
|
| Q |
605 |
agctacgcagtgccggtgttatttatacaatcctctttagcttctatcttgatcgcaattttacagttcctacttgcaccacttggacagaccagctttg |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31568965 |
agctacgcagtgccggtgttatttatacaatcctctttagcttctatcttgatcgcaattttacagttcctacttgcaccacttggacagaccagctttg |
31568866 |
T |
|
| Q |
705 |
ttccacaagttctggtaatttatttaatatttctgaaatatgtttgttagaattgaaatactattttct |
773 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31568865 |
ttccacaaattctggtaatttatttaatatttctgaaatatgtttgttagaattgaaatactattttct |
31568797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 201 - 511
Target Start/End: Complemental strand, 31582924 - 31582609
Alignment:
| Q |
201 |
ttaaggacttaagcccattaacagttcctacccaataccatgaattgacttctaaaaat---atcatcatagactaatcacaaaaaagaactaattttaa |
297 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| ||||| ||| ||| |||||||| ||||||||| ||||||||||||| | |||||| ||||| |
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|
| T |
31582924 |
ttaagcacttaaacccattaacagttcctacctgataccgctgatttactactaaaaatatcatcatcataaactaatcacaaaacataactaa-tttaa |
31582826 |
T |
|
| Q |
298 |
aacctt--acccataattcagcgttaccgctatcaaaatt-taatcaatatacgtctcaaaaagttacatcctccaaataaatctaaacattgtctttca |
394 |
Q |
| |
|
||| || ||||||||||||||||||||||||| ||| || |||||||||||| ||| | |||||||||||||||||||||||||||| ||||||||||| |
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| T |
31582825 |
aacattaaacccataattcagcgttaccgctattaaatttataatcaatatacttcttacaaagttacatcctccaaataaatctaaaaattgtctttca |
31582726 |
T |
|
| Q |
395 |
ccctattttctttgccttcctcttcgtcaattccatggagatcaattaactaattacatattctcttctccatatatatcaagcttgatttgcagaaatt |
494 |
Q |
| |
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| ||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
31582725 |
ctctattttctttcctttcctcttcgtcaatttcatggagatcaattaactaattacatattctcttctccaaatatatcaagcttgatttgcagtaatt |
31582626 |
T |
|
| Q |
495 |
aacgtgacatggctgca |
511 |
Q |
| |
|
|| |||||||||||| |
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|
| T |
31582625 |
aataagacatggctgca |
31582609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 237 - 511
Target Start/End: Complemental strand, 31596987 - 31596711
Alignment:
| Q |
237 |
accatgaattgacttctaaaaatatcatcatagactaatcacaaaaaagaactaattttaaaaccttac--ccataattcagcgttaccgctatcaaaat |
334 |
Q |
| |
|
||||| |||| ||| |||||||||||| |||||| |||||||| ||| |||||| ||||||| | | |||||||||||| ||||||||| ||||| |
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| T |
31596987 |
accatcaattcactactaaaaatatcaacatagaaaaatcacaacaaa--actaatcttaaaacatcaaaaccataattcagctctaccgctattaaaat |
31596890 |
T |
|
| Q |
335 |
t--taatcaatatacgtctcaaaaagttacatcctccaaataaatctaaacattgtctttcaccctattttctttgccttcctcttcgtcaattccatgg |
432 |
Q |
| |
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| |||||||||||| ||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
31596889 |
taataatcaatatacatctcacaaagttacattctccaaataaatctaaacattctctttcaccctattttctttcccttcctcttagtcaattccatgg |
31596790 |
T |
|
| Q |
433 |
agatcaattaactaattacatattctcttctccatatatatcaagcttgatttgcagaaattaacgtgacatggctgca |
511 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||| |||| ||||||||||||||||| |||||| |||||||||||| |
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|
| T |
31596789 |
agatcaactaactaattacatattttcttctccaaatatctcaagcttgatttgcagtaattaataagacatggctgca |
31596711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 567 - 736
Target Start/End: Complemental strand, 31596634 - 31596465
Alignment:
| Q |
567 |
aaagatcaaaaggaattttctttcatgaaaacccatttagctacgcagtgccggtgttatttatacaatcctctttagcttctatcttgatcgcaatttt |
666 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||||||| ||| || |||| ||| ||||| ||||| |||||||||||||| |||| | ||||||||| |
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|
| T |
31596634 |
aaagatcaaaaggaattttcttacaagataacccatttagttacacattgccagtgctatttctacaaacctctttagcttctctctttaccgcaatttt |
31596535 |
T |
|
| Q |
667 |
acagttcctacttgcaccacttggacagaccagctttgttccacaagttctggtaatttatttaatattt |
736 |
Q |
| |
|
||| ||| |||||||||||||||| |||| |||||| ||||||||| | ||||||||||||||||||||| |
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|
| T |
31596534 |
acaattcgtacttgcaccacttgggcagagcagcttcgttccacaaatgctggtaatttatttaatattt |
31596465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 567 - 753
Target Start/End: Complemental strand, 31606748 - 31606561
Alignment:
| Q |
567 |
aaagatcaaaaggaattttctttcatgaaaacccatttagctacgcagtgccggtgttatttatacaatcctctttagcttctatcttgatcgcaatttt |
666 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||| ||| || |||| ||| | ||| ||||| ||||||||| |||| |||||| | ||||||| |
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|
| T |
31606748 |
aaagatcaaaaggaattttccttcatgataacccatttagttacacattgccagtgctgtttttacaaacctctttagtttctctcttgaccacaatttt |
31606649 |
T |
|
| Q |
667 |
acagttcctacttgcaccacttggacagaccagctttgttccacaagttctggtaatttatttaata-tttctgaaatatgtttgtta |
753 |
Q |
| |
|
||| ||| | ||||||||||||||||| | |||||| ||||||||| | |||||||||||||||||| |||||||||||||| ||||| |
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|
| T |
31606648 |
acaattcatgcttgcaccacttggacaaagcagcttcgttccacaaatgctggtaatttatttaatattttctgaaatatgtatgtta |
31606561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 230 - 384
Target Start/End: Complemental strand, 31607137 - 31606978
Alignment:
| Q |
230 |
acccaataccatgaattgacttctaaaaatatcatcatagactaatcacaaaaaagaactaattttaaaac--cttacccataattcagcgttaccgcta |
327 |
Q |
| |
|
|||||||||||| |||| ||| ||||||||||||||||||||||||||||||| | ||||||||||||||| | ||||| |||||||| ||||| || |
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|
| T |
31607137 |
acccaataccatcaattcactactaaaaatatcatcatagactaatcacaaaacaaaactaattttaaaacatcaaacccacaattcagctttaccactt |
31607038 |
T |
|
| Q |
328 |
tcaaaatt--taatcaatatacgtctcaaaaag-ttacatcctccaaataaatctaaaca |
384 |
Q |
| |
|
||||| |||||||||||| ||||| |||| ||||||||||||||||||| |||||| |
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|
| T |
31607037 |
gtgaaattaataatcaatatacttctcacaaagtttacatcctccaaataaatttaaaca |
31606978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 543 - 736
Target Start/End: Complemental strand, 31582556 - 31582363
Alignment:
| Q |
543 |
tatgtgaacaaatgatcatacatcaaagatcaaaaggaattttctttcatgaaaacccatttagctacgcagtgccggtgttatttatacaatcctcttt |
642 |
Q |
| |
|
|||||||||| ||||||| ||||||| |||| |||||||||||||||||| || |||||||| | | || |||| ||| |||| | ||| |||| || |
|
|
| T |
31582556 |
tatgtgaacacatgatcaattatcaaagttcaagaggaattttctttcatgataatccatttagtttcacattgccagtgctattgctgcaaacctcctt |
31582457 |
T |
|
| Q |
643 |
agcttctatcttgatcgcaattttacagttcctacttgcaccacttggacagaccagctttgttccacaagttctggtaatttatttaatattt |
736 |
Q |
| |
|
|| |||| |||||| | |||||||||| || ||||| ||||||||| ||| |||||| ||||||||| ||||||| |||||||||||| |
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|
| T |
31582456 |
agtttctttcttgaccacaattttacaaatcacacttgaaccacttggggagagcagcttcgttccacaaacgctggtaagatatttaatattt |
31582363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 31569564 - 31569526
Alignment:
| Q |
8 |
agcacagaccgtattggaacaaaaacaaagtaatagaga |
46 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31569564 |
agcacagaccgtattggaacaaaaacaaagtaatagaga |
31569526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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