View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15475_low_3 (Length: 477)
Name: NF15475_low_3
Description: NF15475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15475_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 23 - 476
Target Start/End: Complemental strand, 6725678 - 6725225
Alignment:
| Q |
23 |
aggaagtaggatatgattaaacaagcaagcaatgatatatcttttgaaacctagctagctaactgcgtttccaagaggctcacggtgaaataacatgcat |
122 |
Q |
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| T |
6725678 |
aggaagtaggatatgattaaacaagcaagcaatgatatatcttttgaaacctagctagctaactgcgtttccaagaggctcacggtgaaataacatgcat |
6725579 |
T |
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| Q |
123 |
gatggtcatgtctgcacattatatattaatttgtttatgagaattgataaaacaagcacacaccgtatatttttgtaaggggaacacataccgtattcca |
222 |
Q |
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| T |
6725578 |
gatggtcatgtctgcacattatatattaatttgtttatgagaattgataaaacaagcacacaccgtatatttttgtaaggggaacacataccgtattcca |
6725479 |
T |
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| Q |
223 |
tgcatgatcagtaatggcttgttattgcatacgttgtggcaaaacatgtgtccaaatatcaaccctctttgtttatatatatggtatttagaagaagctt |
322 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6725478 |
tgcaagatcagtaatggcttgttattgcatacgttgtggcaaaacctgtgtccaaatatcaaccctctttgtttatatatatggtatttaggagaagctt |
6725379 |
T |
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| Q |
323 |
gactagtcatggcaatttttatttgttgcagtaatctttgtgttgatggtggttagagctatcggagtcggaagtacatctttttgtaacgtgtttgttt |
422 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6725378 |
gactagtcatggcaatttttatttgttgtaataatctttgtgttgatggtggttagagctatcggagtcggaagtacatctttttgtaacatgtttgttg |
6725279 |
T |
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| Q |
423 |
gtcgagtctattttatttggggtgtcggcgtcactctcaaaagatttatctgtg |
476 |
Q |
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| T |
6725278 |
gtcgagtctatttgatttggggtgtcgacgacactctcaaaagatttatttgtg |
6725225 |
T |
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