View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15475_low_4 (Length: 368)
Name: NF15475_low_4
Description: NF15475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15475_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 46 - 357
Target Start/End: Complemental strand, 2272115 - 2271804
Alignment:
| Q |
46 |
agaattgcaggacaattggcttcagggagcaaaaataagcccaaaactagtttgcaaaaaatcatagacgaccgagaacaccaggaagcagccctcatcc |
145 |
Q |
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| T |
2272115 |
agaattgcaggacaattggcttcagggagcaaaaataagcccaaaactagtttgcaaaaaatcatagacgaccgagaacaccaggaagcagccctcatcc |
2272016 |
T |
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| Q |
146 |
cataaaatcaaaccagaaacgcaggaagccagtaaatacaaaagcattacataccacattatttttgcaccgattctaaacttgagataataagtcatta |
245 |
Q |
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| T |
2272015 |
cataaaatcaaaccagaaacgcaggaagccagtaaatacaaaagcattacataccacattatttttgcaccgattctaaacttgagataataagtcatta |
2271916 |
T |
|
| Q |
246 |
cttaccacattacaccaacattgtaactactttaattatgaacattttagttggtgtaaaatcccctctgtagaagaacaatattcatcttaaatttcag |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2271915 |
cttaccacattacaccaacattgtaactactttaattatgaacattttagttggtgtaaaatcccctctgtagaagaacaatattcatcttaaatttcag |
2271816 |
T |
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| Q |
346 |
cattgaattcat |
357 |
Q |
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|||||||||||| |
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| T |
2271815 |
cattgaattcat |
2271804 |
T |
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