View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15475_low_5 (Length: 363)
Name: NF15475_low_5
Description: NF15475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15475_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 1957051 - 1956962
Alignment:
| Q |
19 |
tatgtctcctcattgaagttgcttgtgaaaaacctatcagcctctagcctccttcaaagtgcatgaaagttcaatcaaatccataatatg |
108 |
Q |
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| T |
1957051 |
tatgtctcctcattgaagttgcttgtgaaaaacctatcagcctctagcctccttcaaagtgcatgaaaatttaatcaaatccataatatg |
1956962 |
T |
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Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 1942132 - 1942053
Alignment:
| Q |
19 |
tatgtctcctcattgaagttgcttgtgaaaaacctatcagcctctagcctccttcaaagtgcatgaaagttcaatcaaat |
98 |
Q |
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| T |
1942132 |
tatgtctcctcattgtagttgcttgtgaaaaatctatcaccctctagcctcctgcaaagtgcattaaagttcaatcaaat |
1942053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 1928155 - 1928076
Alignment:
| Q |
19 |
tatgtctcctcattgaagttgcttgtgaaaaacctatcagcctctagcctccttcaaagtgcatgaaagttcaatcaaat |
98 |
Q |
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| T |
1928155 |
tatgtctcctcattgtagtagcttgtgaaaaatctatcaccttctagcctcctacaaagtgcattaaagttcaatcaaat |
1928076 |
T |
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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 36774912 - 36774869
Alignment:
| Q |
147 |
atactgaggcatatcacacttgttcttatgggatttaaaaatta |
190 |
Q |
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| T |
36774912 |
atactgaggcatatcacacttgttcttatgggatttaaaaatta |
36774869 |
T |
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